Scaffold Ga0153697_1331

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1331
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15205
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (86.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F017297	Metagenome	241	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_133119	F004231	AGGAG	MSVKPSDFKHEICVYLEGIGECLVCFDILTPGDELDPDHSDDYEIDFAVFDEQDKHITYDIDHKQYNHCENKAMDEMRDITTQWKKEWEEAFD*
Ga0153697_133120	F029673	N/A	MAAVSENTITAMCNSYELGAEHERDVVSSIIFNMVKDLHLAQNIVDTIRVRE*
Ga0153697_133121	F015570	AGG	MNDKLDQAFDELEFNINVTEEMRKAKYLAEQKEVATGVTDGSIQRALVRDLTENLRTLPQSTDYNLLRNDVIEEVAVELAKLPFGDTAASYAAFVRQMKR*
Ga0153697_133122	F024504	AGGAG	MDRPVVGVTAPYRKSDYTYNNMLLDRIKDLEALVAKLEQRIKVLEGK*
Ga0153697_13316	F017297	AGG	LCRGFLALTFQFQSTTLIGVNMKITEQKNGNYTTFERIAHNGYYIVKLYKNGQLCDKIMADTYKGAREYLKSFNLLAKNS*