Scaffold Ga0153697_1279

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1279
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17083
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000706	Metagenome / Metatranscriptome	926	Y
F000763	Metagenome / Metatranscriptome	901	Y
F013890	Metagenome	267	Y
F067734	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_127912	F000706	GAG	MTQNDFFTLYIASLGIFGGLAGYVITHLLNEIKRLNQRVDEIYNILLER*
Ga0153697_127913	F000763	AGGCGG	MKNMKHPAYLAAGAFLAAWASSNFEADYRAILWAVLSGVFGYASPKK*
Ga0153697_12796	F013890	AGGA	MGFVEYFDETTGVWTNIEDIPLYDTINCQLCNEPTEAHDIVAEIKFKDNQPVVGAWQCRKCHAVNG*
Ga0153697_12799	F067734	AGG	MANTDKLLLICMLGMIIGFIMITIDVQKRSYEKGVRDGYHRGRNFRGDLD*