Scaffold Ga0153697_1200

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1200
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20381
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F015592	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_120011	F014495	GAGG	MIKAAQAAPLGKTYRVSSENAWPLRGLDGKTFAERRAEREKESNK*
Ga0153697_120012	F009516	AGGA	MSRPMTYPMGRMVIGDVETMPATEKGWAKRTSRNVSQYGIRNGKAFKCRTDVVKGLTFITRLG*
Ga0153697_120017	F015592	AGCAG	MKFLTLLLGILDKLLGAWAESRWKQQGRQETIKETNDAINEQIALGEAAISVPDPERNERLRNRFDRSRSNK*