Scaffold Ga0153697_1134

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1134
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26168
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (63.27%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F009066	Metagenome	323	Y
F015449	Metagenome / Metatranscriptome	254	Y
F029043	Metagenome	189	Y
F033352	Metagenome / Metatranscriptome	177	N
F044969	Metagenome	153	N
F048834	Metagenome	147	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_113412	F044969	AGG	MSASLTVDASKLQKALKAFIGNTKAEASKEMRIQARMLCVSLANSTQPFGKSAIAKATGEKAVTRDIDRVYKSGPTAVKDIASLPLPRGKTATQNAKQAAAALAGLLQGRTTGKRGAKIVSAAQDLLDRINYKPYVNTRIGVFDQGQAHNKARFGRRKSVPKNQFVSQVVTKDSQLTKYFKEKRGNVGIAKSGWAVCAGLLGGFKGIPKWVYRHTGGGRVNDQSGKGLGIVSKPFIQMTNTIPWINAVISTATIQKSIDIQITKMIKRLGYITAAESKKAGL*
Ga0153697_113422	F029043	AGG	MSTDDQACQALQYLLDEGFIELGYIDGKPAVHLTTSLADAQKAILTIVSKDSADWWK*
Ga0153697_113423	F006891	N/A	MSADQVAELTERLSEVRCDVARILERQTMVMDMLEKSQASLGEYHGRLTNMERDAHTIKTKLWLVAVVSGAVFSTIWELIKRRLAF*
Ga0153697_113427	F009066	GGAG	VSQMSPEHEKHLAGILSDLVKDVSAKYRRGQEEHGGALWRRPVWKDTWDEVLDLCTYVHTLRLQLGVIGDLALQGASDESLCASQSRENCRQILAVLQGFPSAADKK*
Ga0153697_113429	F048834	AGGAGG	MAIPGVDWAAALDAYVAGDRAEVVPPGWYTKIEISKQWGKSDVYTNKILTRMIKAGGAERKVFSIRIKICNRGGKIGYCRRVPHYKLIKPAKK*
Ga0153697_113436	F033352	AGGAGG	VSEFRLIENIEVMACRNSAERVVKALNRGEVQQAKDLARKHEIAWHVTDREFQTLNQPHRTNDFCDDE*
Ga0153697_113440	F005502	AGGAG	MKAMLWITAILGMTTGQAANVMIDLRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWLAVDTGTAVKSKKASRGKLPVVDVFAASESQFKAMRLPKVATVEVTR*
Ga0153697_113443	F081048	N/A	MSVKRITWQIEILERAKKSLIDGRLVIARSRLDMALHIAKELLKRAQAYQKRDAEKKK*
Ga0153697_113445	F007747	GGAG	MKDLGKITFGKARPAPKQVLLDVTYDRKTGKALHAFGLKQLKKDPEAVIGYVIAKALKAFAKK*
Ga0153697_11347	F007911	AGG	MPAVTMLDRLVEAALQELLATTVTGVNYHLSHDKTENLPPSITIKATLGTEEPVQGSGVFSVPVDIIVEDSYDDTTVDAHTQKCSKVLQAFYDSSSLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTYRLAVIAMPNSIAS*
Ga0153697_11349	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLRQSDPVTCIVEEGGHRKFTFWFSTGDDQDAKAEMERNWVDMKSDPESAIRYVRAALENRETLLGLMKRAEPILSIKRGSQTLLISERASPELKRAMLKKL*