Scaffold Ga0153697_1123

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1123
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26781
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F020344	Metagenome / Metatranscriptome	224	N
F029443	Metagenome / Metatranscriptome	188	Y
F044503	Metagenome	154	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_112310	F005529	GAG	MPRTLPISKPDYSLEMRFKDSQGKWSAWINKGKGLFQSIEIVQLQIRLISAPYRGNEIEVRFTWNGWLCDYSGQPTGEVIKFK*
Ga0153697_11232	F044503	N/A	MRRRYLTEYEKELIFERWQDRIPTKVIAIELGVSYMCVYNQLKKRYLVG*
Ga0153697_112330	F020344	N/A	MVMVIIQKGSASAIYIALFDKRETSSNTYTFLFQHEVTKEEVTLSLADVSTHKERYSEFNILEASFQNSTVGFWRYYVTQAGSGATIIATGKMELTAVNLSTAGVVRYDGYNGNYKTYTTI*
Ga0153697_112333	F029443	N/A	MTLSELVAKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIEYPVLWTVVRPAQYATSVIRYRAVLLFADLLTEDKSNRLQIQSDQMLVALDVLGKLKLDTAYSFNPSTNATIEFFQERFDDFTAGVSIEIEISSPVPLNLCAIPTT*
Ga0153697_11234	F093880	AGAAG	MESKQIQEMNDLNRDIWGMIVQAQKTKNWALIEINLKRLYSLQKKYINIINIMDYDLKGTTLAWKDEIRVRNQFEKQWFKDVAERNGHYKAMKENIDKYFGNEETI*