Scaffold Ga0153697_1091

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1091
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30010
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (21.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F034850	Metagenome	173	Y
F043829	Metagenome	155	Y
F059966	Metagenome	133	Y
F060909	Metagenome	132	Y
F085713	Metagenome	111	N
F093875	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_109111	F043829	N/A	MSEMQMPKWGDLNTQERHKLLGELIDAMIYSGEAVEHLQTTVEQFRLMGYVRSVILPQTEPNEA*
Ga0153697_109115	F059966	N/A	VKTTNSITEYIKGNQLRKNAKWKLADGVWLFEMQNGIWGSQELFDEFYPTYEYVKFNDKGTNPDKTKIR*
Ga0153697_109122	F060909	N/A	MYMKRKGFYIKKAENGLYLNIFKADFVEYINDQPGEWVKFKIYEKKDDPKGFTHNMDIIKQIVKEDKID*
Ga0153697_10913	F034850	AGGA	MEQDLVLGEEQEVDEVEEYIEEISYSEYISASVDVLNMLESANPMTKIEVKRVESLRKMCYEMLEFSVKSMHATLFNE*
Ga0153697_109134	F010155	N/A	MLDSSNNIRNIYVSALNGFISYNGLNVPVYGQQPFTTTPQNYIVISSITESAINTNNSFGNSVDVIIDIFSEQYRIYDNSIVDNISSQILNILIPDTQVNGFSDTYFEVYPTQRTLSSYLPLRDGEKFVARKIITISNLVNQK*
Ga0153697_109137	F004112	GGAG	MIKGSEKRKVDKYKQTRLLMFTMVRLMGDPKTAPKTPEALWELPGDEHSDNVMSEDEMREIFKRLGK*
Ga0153697_109141	F093875	N/A	MIGEHNLRAIKRGDTWVLPLSFWEDECQEVAINVSTYTFKLMAKNSSGTTIFTWDNAIFVQGATNERTVTLSAVTTATYTLGEFNYELQVTTPSGVYTWMQGFVQVVDQITS*
Ga0153697_10919	F085713	GAG	MGSSVVSCIHHLKLADEYAKDFVRSAPGTRGSVIFADYSKRINWIFRDVITFPHFGDDVREGMRKEIASDAFSYDSLTEKLALLNPEQRETMESLLDDILRGGTIEVNITP*