Scaffold Ga0138380_103699

Overview

Basic Information

• Taxon OID: 3300011284
• Scaffold ID: Ga0138380_103699
• Source Dataset Name: Marine microbial communities from the Southern Atlantic ocean - KN S15 AAIW_A metaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 529
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052640	Metagenome / Metatranscriptome	142	N
F062832	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138380_1036991	F062832	N/A	GSDNDVGADITVPAQPYPQGDQAGLDDDRQNDNAPAGDSAPSMQEKPLHKSETPKLVSKSQHTFTTETPRPGAAIEKAGQSQTDFSPILKDARAEGYEGLSQVARNILKGKYYTPTPEEVAGF*
Ga0138380_1036992	F052640	AGCAGG	MTQIRTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIYGAYAWAQLNL