Scaffold Ga0151620_1072098

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1072098
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1112
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F018913	Metagenome / Metatranscriptome	232	Y
F047662	Metagenome / Metatranscriptome	149	Y
F063620	Metagenome / Metatranscriptome	129	N
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_10720981	F008402	N/A	MEISTQIRIQQHEGYWYTVEDTHLDVGCPGCTISIWGDGERDHHICMDKEEALAIADAIYKLFKN*
Ga0151620_10720982	F047662	N/A	MDYETYLNIHQYSPDDRVYYKLKVTDVMNMDYYYEGNALTLDDVMECVKLHLKQHQN*
Ga0151620_10720983	F063620	N/A	MTNPIIPKVAYIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTFILERGKSYFYDMRGEFERHIRLIEDN*
Ga0151620_10720984	F090316	GAGG	MPDDLQREEEIFLKALKEYKKKKSQEPTDKTTNTLPAVIAAAL*
Ga0151620_10720985	F018913	AGCAG	MTNQQRAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGNDGLYINKNLNTYYLNGREDCLNEIDGICDELLEL*