Scaffold Ga0151620_1032480

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1032480
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020166	Metagenome / Metatranscriptome	225	Y
F028166	Metagenome / Metatranscriptome	192	Y
F088905	Metagenome / Metatranscriptome	109	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_10324801	F091936	AGGA	MNDGLDRSMRLKLVIEDMLKDIDMSGEEWNDRDKDGVAYWEKWNKNDLIG*
Ga0151620_10324802	F020166	N/A	MREPKIMKMDWRSLGYWPVYKDGKLTWEKDPYVQDE*
Ga0151620_10324805	F088905	AGG	MSENKDIDTTPVVEVKEEPKAEVKSAPVADATTDYWANAWANRGV*
Ga0151620_10324806	F028166	AGGAG	MTNGIDLNGFNETKAGDTNNLDLNPTGQAPAAAFPAEDKSSQDGAGLGNGR*