Scaffold Ga0151620_1000011

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1000011
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70193
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (36.26%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F022640	Metagenome / Metatranscriptome	213	Y
F027828	Metagenome / Metatranscriptome	193	Y
F034753	Metagenome	174	Y
F034907	Metagenome / Metatranscriptome	173	Y
F061794	Metagenome / Metatranscriptome	131	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y
F091925	Metagenome / Metatranscriptome	107	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100001112	F034753	N/A	MKSLVTELTENYKKQATYWSGSLFADVVNLSTDYKGKWGEELFRDILLKYTDIPVQWDEDSNTSNNDGVYDLFWYLHNGKKLRIEVKTSGRTVSKGVAKGWQHENVYFCDDKWDKMVFIDYDANDVMYITIVNYDQVVTNDMIDLSLFGKNGHCRKNEDGKAKVDFSMRSIENGIAKGVTFKYDFNNPNDDLLGFFLLSKLA*
Ga0151620_100001116	F013631	GGA	MIVSEVFYYTTSRWDWIEGNVNQMWIQEIEESPDCYRYVAVAYNPRKDVGIVMSEPRCYADTLQWVRSWCNSFCILPEFSVAV*
Ga0151620_100001120	F061794	N/A	MPFTKKFPNSGETKHIRVPVVYADLVLELMELFESKFESEKGKHLLKKYISNLS*
Ga0151620_100001122	F027828	GGAG	MNNTNTMLNKVLMTEELLNEKQLTALRDMLYVYKDLQSEVHNYPPEDTLFTQTQFEIFDIFDIK*
Ga0151620_100001124	F091925	N/A	MTQVSFTSGELLDIISTLEEKENALYDADDKHLAAYYMNLGNQFQKIYDKLQEFVPENRVANLVLAVN*
Ga0151620_100001127	F101038	N/A	MQLTNSFPPVDAMVKKIQEFDYVKFCDNVVEFSATAYAIVVGVFSYVWTAFQLWWDDNGEATQVNLIRFVVNVIDFIAAIVIATPKVYRWVKLNSNRLVDALFFQYTFA*
Ga0151620_100001132	F034907	GAG	MITLVIGGVILSTFATMFYLEDRDGGGLYDPDPSASYRHKKSNK*
Ga0151620_100001133	F022640	N/A	MRIAFLIATLALGLRVGLAAHATVNEYQEHQADRFCQIDPNYCK*
Ga0151620_100001136	F082582	N/A	MTVDFSKDVMLGMLRKGATGTQLLDILNVLVPEQIELTREYVCEQLGIADCPENDDEIAAYMAAV*
Ga0151620_100001138	F084145	N/A	MFVICPKSFDLIDAEWFDNFYEAKEEALDWSVELAGEDVIVYEAIEEDEGAYDFQKRYSICA*
Ga0151620_100001143	F015080	N/A	MFDQLQFKAHHLPGAIQGRYKFSNGWSISVVAGLPGCGLYGSVFDGTFEVAIIRPNGNMTEDVIGWNTKDEVSAMMKVLVQL*