NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151623_1188412

Scaffold Ga0151623_1188412


Overview

Basic Information
Taxon OID3300011264 Open in IMG/M
Scaffold IDGa0151623_1188412 Open in IMG/M
Source Dataset NameAcid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 63
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterXcelris labs Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Source Dataset Sampling Location
Location NameMalanjkhand , India
CoordinatesLat. (o)22.023017Long. (o)80.732183Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004874Metagenome / Metatranscriptome420Y

Sequences

Protein IDFamilyRBSSequence
Ga0151623_11884122F004874GGAGGMGFNAMQPGKIKRSDLVMLLAAVVVVVALVVWATL*

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