Scaffold Ga0151661_1045188

Overview

Basic Information

• Taxon OID: 3300011261
• Scaffold ID: Ga0151661_1045188
• Source Dataset Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2443
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36023
  • Long. (^o): 137.9591
  • Depth (m): 570

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033810	Metagenome / Metatranscriptome	176	N
F050305	Metagenome	145	Y
F051932	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151661_104518811	F051932	N/A	MFDLRKEYDTITKLRWLQVNELALKYSNDQELGSEVRKLIKK*
Ga0151661_10451882	F050305	N/A	MNQIGCTIDLVALDEFDIHYHQLGENEKQWCHDEMINNPKWLKKDWEDPLFCMADKWKAGLPIYKTYK*
Ga0151661_10451889	F033810	N/A	MSKSKQIHWNPDTIDHFIFISNYADVDQVLTQVENFVEIDCELQGDDTEKDLVEDLMNKIYERRYD*