Scaffold Ga0151677_1004635

Overview

Basic Information

• Taxon OID: 3300011258
• Scaffold ID: Ga0151677_1004635
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5847
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019392	Metagenome / Metatranscriptome	230	N
F055204	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151677_10046353	F055204	AGGAG	MQLDMEMATKAYAELSEQEKEIVREAVDSPLMGILTKVFGEEFVQALGSFNRPARKMDAEMRQQAARMLMR*
Ga0151677_10046358	F019392	GGAGG	MSVTPQFYEREFNGKLRDFVRITVKGMKDIFEAPVRPQDLSRFPEEWEAYKKTKGTKKIVGTPLKDLPAMSESRRIELELIGIESVEDLAKADIDNLRSIGEPYVELQRIAELTMNAKKPSPKKVHKPLNIGIPDEPINDMPERS*