Scaffold Ga0151675_1002001

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1002001
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3357
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027055	Metagenome	196	Y
F063586	Metagenome	129	Y
F083394	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10020014	F083394	AGGAG	MAIIKKLIKRVQFEIKAVYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFEINGRMFDI*
Ga0151675_10020017	F063586	AGGAG	MDKLKTLIEFKLLCECHDWYYQRSEDPHAYDRGDRNRKYLESIMREGGEEYERIYFSYKS
Ga0151675_10020019	F027055	GAGG	MNTYQKIILAVALTCAFAWVSNDELDHDIKQAAQYKQDVCTGSIPDYDNIKPDCRGLTNVNNH*