NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F083394

Metagenome Family F083394

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083394
Family Type Metagenome
Number of Sequences 113
Average Sequence Length 62 residues
Representative Sequence MAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Number of Associated Samples 63
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 79.65 %
% of genes near scaffold ends (potentially truncated) 30.97 %
% of genes from short scaffolds (< 2000 bps) 83.19 %
Associated GOLD sequencing projects 53
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (54.867 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(30.973 % of family members)
Environment Ontology (ENVO) Unclassified
(74.336 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.035 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 74.60%    β-sheet: 0.00%    Coil/Unstructured: 25.40%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF02511Thy1 55.75
PF02178AT_hook 2.65
PF13155Toprim_2 1.77

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 55.75


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A54.87 %
All OrganismsrootAll Organisms45.13 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10015405All Organisms → Viruses → Predicted Viral4671Open in IMG/M
3300000101|DelMOSum2010_c10020496All Organisms → Viruses → Predicted Viral3871Open in IMG/M
3300000101|DelMOSum2010_c10062346All Organisms → Viruses → Predicted Viral1782Open in IMG/M
3300000101|DelMOSum2010_c10070235All Organisms → Viruses → Predicted Viral1616Open in IMG/M
3300000101|DelMOSum2010_c10071519All Organisms → Viruses → Predicted Viral1592Open in IMG/M
3300000101|DelMOSum2010_c10075911All Organisms → Viruses → Predicted Viral1516Open in IMG/M
3300000101|DelMOSum2010_c10119889All Organisms → Viruses → Predicted Viral1038Open in IMG/M
3300000101|DelMOSum2010_c10127515Not Available985Open in IMG/M
3300000101|DelMOSum2010_c10150072All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria857Open in IMG/M
3300000101|DelMOSum2010_c10229789Not Available599Open in IMG/M
3300000116|DelMOSpr2010_c10015440All Organisms → Viruses → Predicted Viral3837Open in IMG/M
3300000116|DelMOSpr2010_c10021989All Organisms → Viruses → Predicted Viral3096Open in IMG/M
3300000116|DelMOSpr2010_c10045701All Organisms → Viruses → Predicted Viral1946Open in IMG/M
3300000928|OpTDRAFT_10018877Not Available685Open in IMG/M
3300001450|JGI24006J15134_10017457All Organisms → Viruses → Predicted Viral3364Open in IMG/M
3300006026|Ga0075478_10005397All Organisms → Viruses → Predicted Viral4458Open in IMG/M
3300006029|Ga0075466_1061486All Organisms → Viruses → Predicted Viral1082Open in IMG/M
3300006029|Ga0075466_1079275All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium918Open in IMG/M
3300006735|Ga0098038_1133254All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300006750|Ga0098058_1209124Not Available506Open in IMG/M
3300006752|Ga0098048_1053757All Organisms → Viruses → Predicted Viral1260Open in IMG/M
3300006789|Ga0098054_1161276Not Available825Open in IMG/M
3300006789|Ga0098054_1162082Not Available823Open in IMG/M
3300006789|Ga0098054_1209797Not Available708Open in IMG/M
3300006793|Ga0098055_1213546Not Available731Open in IMG/M
3300006803|Ga0075467_10064525All Organisms → Viruses → Predicted Viral2247Open in IMG/M
3300006803|Ga0075467_10106812All Organisms → Viruses → Predicted Viral1659Open in IMG/M
3300006916|Ga0070750_10043313All Organisms → Viruses → Predicted Viral2201Open in IMG/M
3300006919|Ga0070746_10339978Not Available682Open in IMG/M
3300006919|Ga0070746_10396320All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium619Open in IMG/M
3300006920|Ga0070748_1118870Not Available997Open in IMG/M
3300006921|Ga0098060_1105006Not Available799Open in IMG/M
3300006929|Ga0098036_1213663Not Available585Open in IMG/M
3300007229|Ga0075468_10035881All Organisms → Viruses → Predicted Viral1747Open in IMG/M
3300007229|Ga0075468_10064481All Organisms → Viruses → Predicted Viral1214Open in IMG/M
3300007229|Ga0075468_10194103Not Available595Open in IMG/M
3300007229|Ga0075468_10196172Not Available591Open in IMG/M
3300007229|Ga0075468_10238840Not Available518Open in IMG/M
3300007231|Ga0075469_10141532Not Available659Open in IMG/M
3300007276|Ga0070747_1076344All Organisms → Viruses → Predicted Viral1254Open in IMG/M
3300007276|Ga0070747_1339288Not Available514Open in IMG/M
3300007346|Ga0070753_1273365Not Available608Open in IMG/M
3300008050|Ga0098052_1177351Not Available835Open in IMG/M
3300009071|Ga0115566_10176952All Organisms → Viruses → Predicted Viral1316Open in IMG/M
3300009508|Ga0115567_10268422All Organisms → Viruses → Predicted Viral1079Open in IMG/M
3300009508|Ga0115567_10876159Not Available533Open in IMG/M
3300010149|Ga0098049_1236198Not Available557Open in IMG/M
3300010150|Ga0098056_1245797Not Available593Open in IMG/M
3300010153|Ga0098059_1229597All Organisms → cellular organisms → Bacteria → Proteobacteria718Open in IMG/M
3300011254|Ga0151675_1002001All Organisms → Viruses → Predicted Viral3357Open in IMG/M
3300011258|Ga0151677_1020056All Organisms → Viruses → Predicted Viral3589Open in IMG/M
3300013010|Ga0129327_10019312All Organisms → Viruses → Predicted Viral3610Open in IMG/M
3300013010|Ga0129327_10141789All Organisms → Viruses → Predicted Viral1194Open in IMG/M
3300013010|Ga0129327_10371410Not Available753Open in IMG/M
3300013010|Ga0129327_10636924Not Available592Open in IMG/M
3300017697|Ga0180120_10252856Not Available715Open in IMG/M
3300017728|Ga0181419_1060843Not Available969Open in IMG/M
3300017757|Ga0181420_1115273Not Available820Open in IMG/M
3300017772|Ga0181430_1130710Not Available736Open in IMG/M
3300017772|Ga0181430_1163094Not Available645Open in IMG/M
3300021375|Ga0213869_10073637All Organisms → Viruses → Predicted Viral1713Open in IMG/M
3300021375|Ga0213869_10189650Not Available933Open in IMG/M
3300021375|Ga0213869_10190917All Organisms → cellular organisms → Bacteria → Proteobacteria929Open in IMG/M
3300021375|Ga0213869_10355485Not Available610Open in IMG/M
3300021378|Ga0213861_10396169Not Available680Open in IMG/M
3300021957|Ga0222717_10017873All Organisms → Viruses → Predicted Viral4789Open in IMG/M
3300021957|Ga0222717_10038023All Organisms → Viruses → Predicted Viral3158Open in IMG/M
3300021957|Ga0222717_10042888All Organisms → Viruses → Predicted Viral2952Open in IMG/M
3300021957|Ga0222717_10078759All Organisms → Viruses → Predicted Viral2087Open in IMG/M
3300021957|Ga0222717_10178893All Organisms → Viruses → Predicted Viral1271Open in IMG/M
3300021957|Ga0222717_10207142All Organisms → Viruses → Predicted Viral1160Open in IMG/M
3300021957|Ga0222717_10531115Not Available628Open in IMG/M
3300021957|Ga0222717_10626304Not Available560Open in IMG/M
3300021958|Ga0222718_10471787Not Available613Open in IMG/M
3300021959|Ga0222716_10099321All Organisms → Viruses → Predicted Viral1970Open in IMG/M
3300021959|Ga0222716_10121137All Organisms → Viruses → Predicted Viral1742Open in IMG/M
3300021959|Ga0222716_10247230All Organisms → Viruses → Predicted Viral1102Open in IMG/M
3300021959|Ga0222716_10365466Not Available849Open in IMG/M
3300021959|Ga0222716_10399086Not Available799Open in IMG/M
3300021959|Ga0222716_10653297Not Available565Open in IMG/M
3300021959|Ga0222716_10770507Not Available502Open in IMG/M
3300021960|Ga0222715_10484409Not Available659Open in IMG/M
3300021960|Ga0222715_10488776Not Available655Open in IMG/M
3300022053|Ga0212030_1036935Not Available685Open in IMG/M
3300022053|Ga0212030_1038654Not Available671Open in IMG/M
3300022067|Ga0196895_1003314All Organisms → Viruses → Predicted Viral1675Open in IMG/M
3300022072|Ga0196889_1025568All Organisms → Viruses → Predicted Viral1213Open in IMG/M
3300022164|Ga0212022_1027500Not Available867Open in IMG/M
3300022178|Ga0196887_1008358All Organisms → Viruses → Predicted Viral3470Open in IMG/M
3300022178|Ga0196887_1106447Not Available620Open in IMG/M
3300022178|Ga0196887_1109257Not Available608Open in IMG/M
(restricted) 3300022931|Ga0233433_10248653Not Available753Open in IMG/M
(restricted) 3300024261|Ga0233439_10331540Not Available643Open in IMG/M
3300025070|Ga0208667_1033649Not Available901Open in IMG/M
3300025085|Ga0208792_1043781Not Available854Open in IMG/M
3300025168|Ga0209337_1009673Not Available6166Open in IMG/M
3300025508|Ga0208148_1133169Not Available501Open in IMG/M
3300025570|Ga0208660_1108419Not Available602Open in IMG/M
3300025645|Ga0208643_1120018All Organisms → cellular organisms → Bacteria → Proteobacteria698Open in IMG/M
3300025652|Ga0208134_1104186Not Available779Open in IMG/M
3300025769|Ga0208767_1223569Not Available612Open in IMG/M
3300025806|Ga0208545_1009596All Organisms → Viruses → Predicted Viral3562Open in IMG/M
3300025806|Ga0208545_1067527Not Available1008Open in IMG/M
3300025806|Ga0208545_1070695Not Available976Open in IMG/M
3300025853|Ga0208645_1169034Not Available809Open in IMG/M
3300025890|Ga0209631_10022923All Organisms → Viruses → Predicted Viral4847Open in IMG/M
3300027820|Ga0209578_10562041Not Available508Open in IMG/M
3300031519|Ga0307488_10457902Not Available773Open in IMG/M
3300031766|Ga0315322_10229700All Organisms → Viruses → Predicted Viral1291Open in IMG/M
3300031851|Ga0315320_10279717All Organisms → Viruses → Predicted Viral1198Open in IMG/M
3300031851|Ga0315320_10675871Not Available666Open in IMG/M
3300032277|Ga0316202_10172198All Organisms → Viruses → Predicted Viral1005Open in IMG/M
3300032277|Ga0316202_10475070Not Available587Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous30.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water15.93%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine15.04%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine11.50%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater4.42%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient4.42%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.54%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.65%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.65%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.77%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.77%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.77%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.89%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.89%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.89%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.89%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300011254Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02EnvironmentalOpen in IMG/M
3300011258Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeateEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300027820Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 (SPAdes)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1001540563300000101MarineMAIIKKLIKRIQFEIKAVYYDLVERELTDRDVQFIFWGVCVLWAIASVYFVVNFEINGRMFDI*
DelMOSum2010_1002049633300000101MarineMAVIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWTIASVYFVVTFDINGRMFDI*
DelMOSum2010_1006234633300000101MarineMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI*
DelMOSum2010_1007023533300000101MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCVLWAIASVYFVVTFDINGRMFEI*
DelMOSum2010_1007151923300000101MarineMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGRMFEI*
DelMOSum2010_1007591153300000101MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGRMFDI*
DelMOSum2010_1011988933300000101MarineMNKIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI*
DelMOSum2010_1012751533300000101MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI*
DelMOSum2010_1015007223300000101MarineMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI*
DelMOSum2010_1022978933300000101MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFDI*
DelMOSpr2010_1001544053300000116MarineMNKIKKLIKRVQFEIKAVYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFEINGRMFDI*
DelMOSpr2010_1002198913300000116MarineAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGRMFEI*
DelMOSpr2010_1004570123300000116MarineMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVFFVVNFDINGRMFDI*
OpTDRAFT_1001887713300000928Freshwater And MarineMNKIKKLIKRVQFEIKAVYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVNFDIN
JGI24006J15134_1001745783300001450MarineMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0075478_10005397113300006026AqueousMNKIKKLIKRIQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0075466_106148643300006029AqueousMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFDINGRM
Ga0075466_107927533300006029AqueousMLPKLKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI*
Ga0098038_113325423300006735MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVNFEINGRMFEI*
Ga0098058_120912413300006750MarineKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVNFEINGRMFEI*
Ga0098048_105375743300006752MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFEINGRMFEI*
Ga0098054_116127623300006789MarineKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI*
Ga0098054_116208223300006789MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFEI*
Ga0098054_120979713300006789MarineQHMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVNFEINGRMFDI*
Ga0098055_121354623300006793MarineMLLKLKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI*
Ga0075467_1006452543300006803AqueousMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFDINGRMFEI*
Ga0075467_1010681233300006803AqueousMLPKLKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0070750_1004331383300006916AqueousMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI*
Ga0070746_1033997833300006919AqueousMLPKLKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI*
Ga0070746_1039632013300006919AqueousMAIIKKLIKQIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGRMFDI*
Ga0070748_111887013300006920AqueousMNKIKKLIKRVQFEIKAIYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0098060_110500613300006921MarineKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI*
Ga0098036_121366333300006929MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEL*
Ga0075468_1003588133300007229AqueousMDKTRGTTMAVIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWTIASVYFVVTFDINGRMFDI*
Ga0075468_1006448123300007229AqueousMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFEI*
Ga0075468_1019410333300007229AqueousVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0075468_1019617223300007229AqueousQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0075468_1023884013300007229AqueousMAIIKKLIKRVQFEIKAIYYDLVERELTDRDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0075469_1014153223300007231AqueousMNKIKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0070747_107634443300007276AqueousMDKTRGTTMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFDI*
Ga0070747_133928813300007276AqueousTRGTTMAIIKKLIKRVQFEIKAIYYDLVERELTDRDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI*
Ga0070753_127336523300007346AqueousMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFDINGRMFEI*
Ga0098052_117735123300008050MarineKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFEI*
Ga0115566_1017695233300009071Pelagic MarineMLPKLKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVFFVVNFDINGRMFEI*
Ga0115567_1026842213300009508Pelagic MarineMLPKLKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVFFVVNFD
Ga0115567_1087615913300009508Pelagic MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVNFDINGRMFEI*
Ga0098049_123619833300010149MarineQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI*
Ga0098056_124579713300010150MarineMLLKLKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEL*
Ga0098059_122959723300010153MarineMLLKLKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI*
Ga0151675_100200143300011254MarineMAIIKKLIKRVQFEIKAVYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFEINGRMFDI*
Ga0151677_102005623300011258MarineMAIIKKLIKRVQFEIKAVYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI*
Ga0129327_1001931223300013010Freshwater To Marine Saline GradientMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWGIASVYFVVTFDINGRMFEI*
Ga0129327_1014178953300013010Freshwater To Marine Saline GradientMNKIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFV
Ga0129327_1037141013300013010Freshwater To Marine Saline GradientMNKIKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFV
Ga0129327_1063692423300013010Freshwater To Marine Saline GradientMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI*
Ga0180120_1025285613300017697Freshwater To Marine Saline GradientMAIIKKLIKQIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGRMFDI
Ga0181419_106084313300017728SeawaterKRNTNAMDKTRGTTMAVIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWTIASVYFVVTFDINGRMFDI
Ga0181420_111527313300017757SeawaterLIKRIQFEIKAVYYDLVERELTDRDVQFIFWGVCVLWAIASVYFVVTFDINGRMFDI
Ga0181430_113071023300017772SeawaterKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVNFEINGRMFEI
Ga0181430_116309413300017772SeawaterMLLKLKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFEINGRMF
Ga0213869_1007363713300021375SeawaterMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGRMFEI
Ga0213869_1018965033300021375SeawaterMAVIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWTIASVYFVVTFDINGRMFDI
Ga0213869_1019091723300021375SeawaterMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0213869_1035548523300021375SeawaterMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0213861_1039616943300021378SeawaterMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFE
Ga0222717_1001787333300021957Estuarine WaterMLPKLKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFDINGRMFDI
Ga0222717_1003802313300021957Estuarine WaterMAVIKKLIKRIHFEIKAVYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVNFEINGRMFDI
Ga0222717_1004288883300021957Estuarine WaterMAVIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0222717_1007875973300021957Estuarine WaterMNKIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0222717_1017889343300021957Estuarine WaterMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFDI
Ga0222717_1020714223300021957Estuarine WaterMNKIKKLIKRIQFEIKAVYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVNFEINGRMFDI
Ga0222717_1053111523300021957Estuarine WaterCILQSEKKRNTNAMDKTRGTTMAVIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFEI
Ga0222717_1062630433300021957Estuarine WaterMNKFKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVNFEINGRMFDI
Ga0222718_1047178713300021958Estuarine WaterMAVIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDIN
Ga0222716_1009932153300021959Estuarine WaterMNKIKKLIKRIQFEIKAVYYDLVERELTDRDVQYVFWGVCVLWAIASVYFVVNFDINGRMFDI
Ga0222716_1012113733300021959Estuarine WaterMAIIKKLIKRIQFEIKAIYYDIVERELTDRDVQFIFWGVCVLWAIASVYFVVNFEINGRMFDI
Ga0222716_1024723033300021959Estuarine WaterMNKIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFEI
Ga0222716_1036546633300021959Estuarine WaterMLPKLKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVNFEINGRMF
Ga0222716_1039908633300021959Estuarine WaterMAVIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVNFEINGRMFDI
Ga0222716_1065329723300021959Estuarine WaterMNKIKKLIKRIQFEIKAVYYDLVERELTDRDVQYVFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0222716_1077050723300021959Estuarine WaterMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVNFEINGRMFDI
Ga0222715_1048440923300021960Estuarine WaterKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFEI
Ga0222715_1048877613300021960Estuarine WaterMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFDINGRMFDI
Ga0212030_103693523300022053AqueousMNKIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0212030_103865423300022053AqueousMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0196895_100331433300022067AqueousMNKIKKLIKRIQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0196889_102556833300022072AqueousMNKIKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0212022_102750023300022164AqueousMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVTFDINGRMFEI
Ga0196887_100835823300022178AqueousMLPKLKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI
Ga0196887_110644733300022178AqueousMNKIKKLIKRVQFEIKAIYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0196887_110925723300022178AqueousMAIIKKLIKRVQFEIKAVYYDLVERELTDKDVQYVFWGVCILWAIASVYFIVNFEINGRMFDI
(restricted) Ga0233433_1024865323300022931SeawaterMNKIKKLIKRVQFEIKAVYYDLVERELTDRDVQYVFWGVCVLWAIASVYFVVNFEINGRMFDI
(restricted) Ga0233439_1033154013300024261SeawaterFEIKAVYYDLVERELTDRDVQYVFWGVCVLWAIASVYFVVNFEINGRMFDI
Ga0208667_103364933300025070MarineMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVNFEINGRMFEI
Ga0208792_104378123300025085MarineMLLKLKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFEINGRMFEI
Ga0209337_100967363300025168MarineMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0208148_113316913300025508AqueousADRRVLMLPKLKKLIKRVQFEIKAIYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0208660_110841923300025570AqueousMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0208643_112001823300025645AqueousMAIIKKLIKRVQFEIKAIYYDLVERELTDRDVQYVFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0208134_110418623300025652AqueousMAIIKKLIKRVQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0208767_122356923300025769AqueousMNKIKKLIKRVQFEIKAIYYDLVERELTDKDVQYVFWGVCVLWAIASVYFVVTFDINGRMFEI
Ga0208545_1009596103300025806AqueousMNKIKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVV
Ga0208545_106752713300025806AqueousQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFEI
Ga0208545_107069513300025806AqueousMNKIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVV
Ga0208645_116903413300025853AqueousIKKLIKRVQFEIKAIYYDLVERELTDRDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0209631_10022923123300025890Pelagic MarineMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGRM
Ga0209578_1056204123300027820Marine SedimentMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFDINGR
Ga0307488_1045790223300031519Sackhole BrineVLMPLKLKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFDI
Ga0315322_1022970023300031766SeawaterMAVIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0315320_1027971753300031851SeawaterMLLKLKKLIKRVQFEIKAVYYDLVERELTDKDVQFIFWGVCVLWAIASVYFVVNFEINGRMFEI
Ga0315320_1067587113300031851SeawaterCVLQSEKKRNTNAMDKTRGTTMAVIKKLIKRIQFEIKAVYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVTFDINGRMFDI
Ga0316202_1017219813300032277Microbial MatMAIIKKLIKRIQFEIKAIYYDLVERELTDKDVQFIFWGVCILWAIASVYFVVNFEINGRMFDI
Ga0316202_1047507023300032277Microbial MatLIKRVQFEIKAIYYGLVERELTDKDVQFIFWGVCILWAIASVFFVVNFDINGRMFDI


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