Scaffold Ga0151671_1023790

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1023790
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7749
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041192	Metagenome / Metatranscriptome	160	Y
F041441	Metagenome / Metatranscriptome	160	Y
F074019	Metagenome	120	N
F087187	Metagenome / Metatranscriptome	110	Y
F097348	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_102379013	F074019	AGAAG	MTPPTIEFLQKCADTTEITNTLGKWLDAKPENKELLGIYNSFLRTFVYINNLELRDYGFNRLISEAREGRNRAVLRARKAEEALEIAEAKVKDLEAKLKIFGI*
Ga0151671_10237902	F097348	N/A	MSTLDELYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEALYEAIVDREVIRD*
Ga0151671_102379020	F087187	N/A	MYTILVVNNNRYLINTMVCDLSQDKACQTILQDFPDDAEIHFETPTKEDLQ*
Ga0151671_10237907	F041192	N/A	MECLEYMSWALKGNHLRVYPVTTKENYTHKVGKKTVNLSYVKLVIEIGNAKHEGKEIYKQHLMHEKVCEIYKFYYDNHKAKK*
Ga0151671_10237908	F041441	N/A	MDTKTELLLDYQEMAILALREEVERLTLENKLLTLKLKKNEFI*