Scaffold Ga0151676_1000467

Overview

Basic Information

• Taxon OID: 3300011251
• Scaffold ID: Ga0151676_1000467
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10402
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F008695	Metagenome / Metatranscriptome	329	Y
F056171	Metagenome / Metatranscriptome	138	Y
F065667	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151676_100046713	F008695	N/A	MIKENKVDKVVHEWSEKEDRWIYIEYNTQRKIVGLNFMQGDEYEYFKKKWAYNNEALMAFYTAMTYTFPIEKASCNTLEFINKVMWAFHEAGVIYNEFN*
Ga0151676_100046715	F000352	N/A	MRNIKLTENDITFVHYVLKYYANHTENLDSDDKQEIYEVANKFK*
Ga0151676_10004677	F065667	N/A	MKRINYYDHLHKLALERYNTRYIAGLTDKQRSELIGDTYEAMRERQLLINLNKKK*
Ga0151676_10004678	F056171	N/A	MRKFTHKAIIAITYATVIGLTTMAISGIGFLIFGLITGQLNADFGIYR*