Scaffold Ga0137475_102093

Overview

Basic Information

• Taxon OID: 3300011227
• Scaffold ID: Ga0137475_102093
• Source Dataset Name: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 10 - S13.1.50.a - transect 1, age 50 years, surface depth).
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1297
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Midre Lovenbreen Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.92777778
  • Long. (^o): 12.25416667
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003244	Metagenome / Metatranscriptome	498	Y
F005657	Metagenome / Metatranscriptome	394	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137475_1020932	F005657	GAGG	MADFTKEWIDHLKTQIAGRMTVVADKVDPQTYDELVTDLAWFTFRFAKDPDTKMRKVFR*
Ga0137475_1020933	F003244	GGAGG	VKWKSRRDPDGKIGDERVRTKFAWTPIDADDGYTYWLSPIVVREKLLPKIGRGGFEDEEEAWEVVEAKPIAGESKKKKK*