NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137470_102792

Scaffold Ga0137470_102792


Overview

Basic Information
Taxon OID3300011197 Open in IMG/M
Scaffold IDGa0137470_102792 Open in IMG/M
Source Dataset NameArctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 5 - S13.2.30.a - transect 2, age 5 years, surface depth)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)719
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameNorway: Midre Lovenbreen, Svalbard
CoordinatesLat. (o)79.11361111Long. (o)12.19583333Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087943Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0137470_1027922F087943AGGLVSEAHHPVVILYEYPLLGEGIAKYLRAQLGVEAMIASWDDLEAVTAALAMGPAVVIFELSDRLRQLDLAALAPHADLIDVSTVVARGPVDSSGAAGLERILQAVRDCITVDE*

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