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Sample 3300011197
3300011197: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 5 - S13.2.30.a - transect 2, age 5 years, surface depth)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300011197 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0121480 | Gp0155456 | Ga0137470 |
| Sample Name | Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 5 - S13.2.30.a - transect 2, age 5 years, surface depth) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Bristol |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 10899365 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Metagenomes Of Arctic Soils |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | terrestrial biome → glacial feature → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information |
| Location | Norway: Midre Lovenbreen, Svalbard |
| Coordinates | Lat. (o) | 79.11361111 | Long. (o) | 12.19583333 | Alt. (m) | N/A | Depth (m) | 0 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F004265 | Metagenome / Metatranscriptome | 446 | Y |
| F027031 | Metagenome | 196 | Y |
| F049731 | Metagenome / Metatranscriptome | 146 | Y |
| F087943 | Metagenome | 110 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0137470_100928 | All Organisms → cellular organisms → Bacteria | 1175 | Open in IMG/M |
| Ga0137470_101298 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1038 | Open in IMG/M |
| Ga0137470_102792 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 719 | Open in IMG/M |
| Ga0137470_104287 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium | 554 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0137470_100928 | Ga0137470_1009282 | F049731 | ARETRALVRLRRREDGAVEVRSCAVKSRAVSNRNCVAVRRGGEHRNENDQSVTQTARMGRRRELDSVGVDGRASSDWRSL* |
| Ga0137470_101298 | Ga0137470_1012981 | F027031 | MGREERDVVEAVVASLPVTVTAWSDGAATLDPLDIVAIRRPIASLSSSGAGRWWVGPREVKPELAEISATGTVYDSVVALWPCDPGVPQCGWGCTIGPSETTFGAGFSSISTDHWRSLTTDPDPVQGYVHEWLHQVEAVYRALGLSEAVLPPLHDAASFTSTRPIDEPPFGRSYAEYHDGDASQLPAARTWAPWYGDWMTGRLRPIGAVQQADQPIGLTPGRWSLRSRS* |
| Ga0137470_102792 | Ga0137470_1027922 | F087943 | LVSEAHHPVVILYEYPLLGEGIAKYLRAQLGVEAMIASWDDLEAVTAALAMGPAVVIFELSDRLRQLDLAALAPHADLIDVSTVVARGPVDSSGAAGLERILQAVRDCITVDE* |
| Ga0137470_104287 | Ga0137470_1042871 | F004265 | VQSWNLLQIDAPGGTVDPTVLYSGEARAVLIAFEPGQALGEHEVKERAFLTVVA |
