Scaffold Ga0137482_101879

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137482_101879

Scaffold Ga0137482_101879

Overview

Basic Information
Taxon OID	3300011196 Open in IMG/M
Scaffold ID	Ga0137482_101879 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1700
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Midre Lovenbreen, Svalbard, Norway
Coordinates	Lat. (^o)	78.99166667	Long. (^o)	12.23	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038916	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137482_1018791	F038916	AGG	LKDAAPADPRRCIHQTIVVAAPTTAPTETMNHISINPSDARDVLDYHNPDGDFEGGDFKRNLITAIICAGPEDRARLALGFPSLVAAIRSQTFNPAGIEYLEGIARSYERPSGQGR*

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