Scaffold Ga0137482_100677

Overview

Basic Information

• Taxon OID: 3300011196
• Scaffold ID: Ga0137482_100677
• Source Dataset Name: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5248
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Midre Lovenbreen, Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.99166667
  • Long. (^o): 12.23
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089339	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137482_1006773	F089339	AGG	MGRSPEDLTGKWADLSERRLLQYQGKLTGLYGHDGDQAAYDFLPRDKQEALALLADRLASLDLWQYVDRIVNVYGQGGVGMYFSESSGLEPVLDTRRDFTRKFARHRDNSGGFIEKHRKRASLHFLYIDPKEGEREWHVHLDLYGPMGSMFSAALHLYYERWKKFRPDWRIMKLWG*