Scaffold Ga0136707_1026746

Overview

Basic Information

• Taxon OID: 3300011182
• Scaffold ID: Ga0136707_1026746
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 4C3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 875
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002413	Metagenome / Metatranscriptome	561	Y
F065732	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136707_10267461	F002413	N/A	TEAPTPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMNEEFKCENRDALVHMGKFARRIDKDVFARHFANWVPVMKHHDSVSPETVVCSDWRYINELRVCQDILWERGWKVRTVYVSTAGVGPANDEELDSIAEIRASHLFDQEYIFKPNARQQIMSEGRILAKSWRL*
Ga0136707_10267462	F065732	N/A	MEALTIETVAWARKVGLSPDRVAFLLACPKYTRTGRNDQPAHIKAENPNHHLQKQGDCWWLRIRRRKTDILHNLGKDLETARRHRDEMLAAYDAGKPI