Scaffold Ga0136703_1017045

Overview

Basic Information

• Taxon OID: 3300011180
• Scaffold ID: Ga0136703_1017045
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 690
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003194	Metagenome	501	Y
F102653	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136703_10170451	F102653	N/A	MTANLLTLNSSKTEFLLIGLSKQLAKINNSSLTTTHSARNLGFIFDEHLTFTDQISYVSKYCYYHIRQLRCIRPYLDTKTASTIAT
Ga0136703_10170452	F003194	GGA	MRVLRGVVYMTKSSGPRTEPWGTPQEEVCQEDRSVSHFTRKQRDDRYDLNQLRTEPWIPNQDERRVIKMSWSIVSKAAERSSRQRQDIFCERCLARR*