3300011180: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300011180
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0154762 | Ga0136703
• Sample Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62790052
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001796	Metagenome / Metatranscriptome	633	Y
F002766	Metagenome / Metatranscriptome	531	Y
F002934	Metagenome / Metatranscriptome	519	Y
F003194	Metagenome	501	Y
F007416	Metagenome / Metatranscriptome	351	Y
F012648	Metagenome / Metatranscriptome	278	Y
F013485	Metagenome / Metatranscriptome	271	Y
F014122	Metagenome / Metatranscriptome	265	Y
F015090	Metagenome / Metatranscriptome	257	Y
F019449	Metagenome / Metatranscriptome	229	Y
F025683	Metagenome / Metatranscriptome	200	Y
F026553	Metagenome	197	Y
F030424	Metagenome	185	N
F059951	Metagenome / Metatranscriptome	133	Y
F085692	Metagenome	111	Y
F090615	Metagenome / Metatranscriptome	108	N
F102653	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136703_1008046	Not Available	1141
Ga0136703_1008115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1135
Ga0136703_1010213	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	967
Ga0136703_1011247	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	907
Ga0136703_1012358	Not Available	851
Ga0136703_1012524	Not Available	844
Ga0136703_1012915	Not Available	826
Ga0136703_1013012	Not Available	823
Ga0136703_1015679	Not Available	729
Ga0136703_1017045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA	690
Ga0136703_1018013	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	666
Ga0136703_1018644	Not Available	652
Ga0136703_1020106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	622
Ga0136703_1020213	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	620
Ga0136703_1022570	Not Available	577
Ga0136703_1024528	Not Available	547
Ga0136703_1025764	Not Available	531
Ga0136703_1027088	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	514
Ga0136703_1027351	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136703_1008046	Ga0136703_10080461	F007416	MASGLFIGLTECELLDIKAKALAMIIEGKTLMSYSDSGSSASKQFAMPPKEMLSEAMFALSRLDPSTYGKRTTVISTDWQNRQD*
Ga0136703_1008115	Ga0136703_10081152	F019449	MTTETFTTIVVPGIASLAYFSAGVACFFAHRPALAVMWLCYSIANICLLSTVLRK*
Ga0136703_1010213	Ga0136703_10102133	F030424	MIDSIQFAELELRVNDLTNALARVIEERDNYKDTADSLFRELEACRATLTQANSDISRLRVYLAQGAEL*
Ga0136703_1011247	Ga0136703_10112471	F013485	IATYGNLAQIITTTLHDATDATAQAAFYLSLRANPQPIFSEITFDLTNPEIDNSDRDNLIGVFMGEAIALTNLPLNMSSGTFQGFVEGWAFQASYNQLSVTLLLSPLAYSLQAMAWDDVPITETWSSVSPTLDWINATIVA*
Ga0136703_1012358	Ga0136703_10123582	F085692	ASTWVVNFVGTVRPIVTYIFIFELCAINAWIAYYVYSRPSLVNNMDDLIRITDVIFSSDEMAMLGGIIGFWFGSRSWAKK*
Ga0136703_1012524	Ga0136703_10125242	F090615	MRALQLAAPEPTDPALITALRVRKGWLRPDSSIVDKAATEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS*
Ga0136703_1012915	Ga0136703_10129152	F090615	LQLAAPEPTDPALITALRVRKGWLKPESPIVDKAATEGLKKLGALLCPPPDADKRSATVKKINEVAAEYLKSVPQARLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAAEAKASAGS*
Ga0136703_1013012	Ga0136703_10130122	F090615	LQLAAPEPTDPTLIAALRVRKGWLKPDDSIVSKAAVEGLGKLGVLLCPPPDADKRSATVKQINEVAAEYLKAVPQARLLIEEAAVEHQASWDPDQPYFERTDVQLHGNLVTAIKMANADRLRAAEAKPAAGS*
Ga0136703_1015679	Ga0136703_10156792	F002766	MLEYAERLLKEVRKLQSDSEGIVLNGTIANMERYRFMMGRLEGLKLVEDMIKESLNSNPDDLDF*
Ga0136703_1017045	Ga0136703_10170451	F102653	MTANLLTLNSSKTEFLLIGLSKQLAKINNSSLTTTHSARNLGFIFDEHLTFTDQISYVSKYCYYHIRQLRCIRPYLDTKTASTIAT
Ga0136703_1017045	Ga0136703_10170452	F003194	MRVLRGVVYMTKSSGPRTEPWGTPQEEVCQEDRSVSHFTRKQRDDRYDLNQLRTEPWIPNQDERRVIKMSWSIVSKAAERSSRQRQDIFCERCLARR*
Ga0136703_1018013	Ga0136703_10180131	F012648	YMVRPPDYARWEMTTKKVISQFGGMWDILYVAHSAMKREAGGKPTKALEVWMESVADVEVGDGDPKVIQEEA*
Ga0136703_1018644	Ga0136703_10186441	F001796	AQAGYVNLQLLDVNQATIPVNINSSISVQVQDTSSSYVPIFGGTVVDIAVEVRDVGSTMFTQTYSITALGALARLPKFIYEDNLPRDFDGDQIFDVLQEILLSTWAQVPGALTWATYNPTETWANAANTGLGEIDRPGNYDLAARSGDPIDAYTLVAALATSGLGYIYEDAQGRISYADSTHRSTYLAANGYVDLDANHARAAGLRIDTRVGDVRNA
Ga0136703_1020106	Ga0136703_10201061	F019449	QAPAYLVSIETFTTVCVPGIASLAYFSAGIANLYTRNYPMAIMWLCYAVANICLLSTVLRK*
Ga0136703_1020213	Ga0136703_10202132	F002934	MNMKHPAIISIGAFLAVWGTTSNFSLDYRAILGSIVAGVFGYATPKK*
Ga0136703_1020213	Ga0136703_10202133	F059951	MSTQDYAALAVAIVTVLGGVTAMLNFMIKHYLAELKPNSGSSMKDAVNRLETRVDKIYEILCDKSQ*
Ga0136703_1022570	Ga0136703_10225701	F090615	APVAPVARAAPVPAPAQKPAASGTLTRNEKLAQIRALQLAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAVEGLKKLGALLCPPLDPEGKSIRAKLFNEIAAEYLKTVPQTRLLIEESIVEHQAFWDTDKVYVERTDEEIHEKLVTALKQAYADLLRAARAKTAAGS*
Ga0136703_1024528	Ga0136703_10245281	F026553	MESIRVKAITAAKAVKEQKNQRIREAMSAWPSTFDTATLREYILKDFTYKGKLSSLIWRMRRHGMMEFKLDGLWHNLCHLPAE*
Ga0136703_1024873	Ga0136703_10248732	F015090	FPPATVLANSVIVSPDDPYLTPSNNQHITISPMANFKIIMTVPLFDNEGNLNGIEDTVCGVFAKLAASSLVYNVSAISAPSILNAASGDLLSCEMSVSILTSWS*
Ga0136703_1025764	Ga0136703_10257641	F090615	LAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQARLLIEESAVEHQASWDPDKVYVERTDEEIHEKLVTAIKMANADRLRAAKAKAAAGS*
Ga0136703_1027088	Ga0136703_10270882	F025683	MVLDLLDPQTLGRLVLIVILMVISAAAGYAKGFKEGKREGMARRKAISRHMSNKVAD*
Ga0136703_1027351	Ga0136703_10273512	F014122	MSFGVAFRNAVGIGLGGIISLFGGRGSEQAQSNLLCENGDNLVQEDGGLILLE*