Scaffold Ga0151669_101049

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_101049
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28283
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F038462	Metagenome	166	N
F047368	Metagenome	150	N
F052258	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_10104917	F038462	N/A	MNEIKVSTEQIDPYTEVFALDVDDVSLQRLQYGEVGSPHPYVRVADITRALQQRTPRCDSDLLDLIDNQGYTYCFFAAKGEVTKNEHRCVAIYAPNGQQLTGVAEGFETVREALGYVMDMEEQG*
Ga0151669_10104921	F047368	AGGA	MPNKCGAIKHAHTEDEALKHLAVGNKSKGYKLKRSGVSIEVIAIKKLPHTL*
Ga0151669_10104922	F026158	AGAAG	VHYGDILELNPTIEFKMRDATAPRICSAEESKLSAVRCMEGFRDKMEMLMKAGDILDHCTSGRSTSEEAAEVRARSLNIWQETGCTIAEAADRGGANRGSFRRWLIKEGHHTPKSK*
Ga0151669_10104923	F052258	N/A	MKKTKQTISERKLVNSEREAEAAMILFACILGGVILILLAIAIG*