Scaffold Ga0151665_1020253

Overview

Basic Information

• Taxon OID: 3300011127
• Scaffold ID: Ga0151665_1020253
• Source Dataset Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1434
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.31041
  • Long. (^o): 137.23108
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151665_10202531	F006845	AGG	MKSYKKQMDLNSYLLEQDFEDYCRFAYEKIQSACEFLGIINDEDYESFKERCYIQVEAE
Ga0151665_10202533	F067646	AGGA	MLEWILYFIAGIFGLVFIGIILSVLAFIYMIRELD*
Ga0151665_10202534	F018155	AGGAG	MGQNRAEVEKRRKELELEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTDYDA*
Ga0151665_10202535	F013088	GGAG	MDEIIKKALWIPEELHKDIKVFAITNNMNIESATQLLLKLGMVSYKENNHGSK*