Scaffold Ga0114922_10210571

Overview

Basic Information

• Taxon OID: 3300011118
• Scaffold ID: Ga0114922_10210571
• Source Dataset Name: Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1638
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Aarhus Bay
• Coordinates
  • Lat. (^o): 56.103
  • Long. (^o): 10.458
  • Depth (m): 27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F030149	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114922_102105711	F030149	AGAAGG	MFVPVKDKLDKLVALTPDDQEKLSYYKSIVPAMIANCHKAHQTIPGYESCKPEIEAFKWFDGINIPVHGYIDLKGDKVIIEDKCKMPRRGIVKKDGTRSWFSGKLPDRPSPYNLLQVDFY
Ga0114922_102105715	F005537	N/A	LKEKQDDYGQFDHTSYVMSGILEKYLSVYNDCEVKVPLKMFGIFMVFLKLWRVMQSENYKKDSFDDINGYAELLRRLVQNEEKR*