Scaffold Ga0151516_10644

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10644
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16277
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_106445	F040082	AGGAG	MTGDTFAMSQEIIELQTRVSELMVALERVTEQRDNAMDAAESLHEELEACRDRIKSLGGQLDRLRIHLQQGIEL*
Ga0151516_106446	F019319	GGAGG	MTKKDIQDAIQFLEKMFVGVGDQDRLFNVIAALKEELARRNKR*
Ga0151516_106448	F025023	AGAAGG	MTNTFEGRTYDTGVDRTCVLQLQSDFDSLRPHQRAMLKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAACAEQFAVMCRAIRWDDQDIVWNTSTDSFGFPSKEKVGK*