Scaffold Ga0151516_10458

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10458
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20069
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (69.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F063689	Metagenome	129	Y
F082685	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1045815	F063689	N/A	MEILFRYLVFDDFGEPIRRFRTKHEAEVYISTRPKHVIKVLPKPPKENIFNLYEEAPY*
Ga0151516_1045836	F082685	GGA	MIKHIQDINEHTKHVVDTISGITVLGTIAQILPAIAALLSIVWYSIRIYEHFKKKFNK*
Ga0151516_1045839	F001991	AGGA	MAIFNKNTLTQVSGFSNQIIAGELVWNQSTYWNLTLENIENAPVTLTGATINAQIIRRQLSNVRDTRYGLTFDIADYTPAPSAIPLTITNIDTAGGTFTLVIDDNAWGLIASDPQLDINASDCVGFSGRIKISYPASGSTPAQDLIVFLLFLVRSDGVVN*