Scaffold Ga0151516_10405

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10405
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21171
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (77.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037622	Metagenome	167	N
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F065530	Metagenome / Metatranscriptome	127	Y
F082352	Metagenome	113	N
F091592	Metagenome	107	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1040512	F102824	AGG	MTPVRVQPEEGKWRVTTMAGNPIGPRLWGAEPPNGLPPIEDLFDDKGKAQDAADLWNAYAMWCKDRSGKRKRR*
Ga0151516_1040513	F091592	GGA	MISAQFTRGDQDDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRVTKNRIGKLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKMAGVRIDQATLNRVIKKGLGNVN*
Ga0151516_1040514	F057984	GGA	MRNNRVNDRVSGRLSILACGKGDKRKIKMDGLGQIKILAERKVKMVELDIEVDDKTRDIVCHAALHEITSDGDALFNYGFNQALKRFIQTKGKKCTKKSSNKKSSRR*
Ga0151516_1040517	F098923	GAG	MFYHEEIDRRHIEALKEILETTEVDPGRLMNLNLGPFASVMNQMLYDKFHGHGWKLDLLTGRFVKTEGE*
Ga0151516_1040528	F037622	AGGA	MTKEQILKEYFSAMGRKGGSVTGPTKARKLSREHYQTVAQAQRERWDKWRAENGRVAIKRER*
Ga0151516_1040532	F082352	AGGA	MKTPADCGDLKVIFRYDDPKFFVGYWDCSTWNGWDCVRVDKETFEAIRDWAKEDGDADLSEYDEAEADEFGLYSLDGHCSQVCGFTHRGIFVTNPFESDCGRFAVDPLEHYGLSHDDLVGIFGENYKSLKS*
Ga0151516_1040537	F065530	N/A	VIGAILQIIASVLRLIPGWREKRIDKIEGEWRNNHQAIDDDLGPKPWWVRYNDTVHEDKRSRDGSDAR*
Ga0151516_104057	F039994	GGA	MENPPTISEMGDAASEIVWRVMGNGSAKSAYGEWFWKDRPVYDYHITRCIKHAVTAQQQIHLNHPCPDESGENALDHLERAVVRALFAWMQLKKGLPRL*