Scaffold Ga0151516_10373

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10373
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22551
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F024768	Metagenome / Metatranscriptome	204	Y
F085383	Metagenome / Metatranscriptome	111	N
F091930	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1037312	F085383	N/A	MTETEKLYKICILDLLIAIDEDVVDWRDHPKLWTAIQKADIALDIWAGMNLKQIKQELENTK*
Ga0151516_1037320	F024768	N/A	LGIDLTLSQPNLTLSQKHLMDYETEITNGHKHIVRHFFKPHEIQVGSRWICSSGSIVTVEGLNTYGSTDPWIEVGYSWEKNGEKFTYEKDVFAFQCRFCLIVEDT*
Ga0151516_1037327	F013631	N/A	MNEIYSYTTSRWDWQDGNVNQMWIQEIEEAPDVYRYFAVAHNPRKNTSMVMSNPRGYVDTLHWVQRFCGSFSILPQYQ*
Ga0151516_1037337	F091930	GAGG	MSVDELVRHDDYEFFASYLGVDYDDYVELIGDFELSEEEIEIEYALSI*