Scaffold Ga0151516_10344

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10344
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24483
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (38.64%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F020891	Metagenome	221	N
F022193	Metagenome	215	N
F023838	Metagenome	208	N
F028156	Metagenome	192	N
F034162	Metagenome	175	Y
F042314	Metagenome	158	N
F084179	Metagenome / Metatranscriptome	112	N
F105021	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1034413	F105021	N/A	MNTLNKLLARWGLKLTRTDQVQIFPDLKPHILLAQAENEELREQNKELKRKLACRTSGEWYWKKKAQRAREVIE*
Ga0151516_1034420	F034162	N/A	MRWVDATFRLPVAANMPVHAMLADGKEERRDTVTGDWRQVVRWRPVVDTEPKPRKKKA*
Ga0151516_1034423	F022193	N/A	MTHTDTLDQHVREYYLYHDEQTKFFDDLASANKPVDAGLDEYVALQQMEHLYQETGTWNADVWSEKGWW*
Ga0151516_1034424	F028156	GGTGG	MVANKEFRHVSGDELLARAKLCARLLEVIEEVTLASELIKDGKYWDAYRVTNKIELMASEVSLDLHGIDIALGEEGKP*
Ga0151516_1034429	F042314	GAG	MTHATGQELKDAGCALVLEHTPERWVADFEQQAAALLKTNGSFTAEEVVTLIGQPPNHSNAIGAACRQFVKRNGLTGSYEPARSPSAHGRIITRWSMTTF*
Ga0151516_103443	F012017	N/A	MAQKRILIGTPLKGDIPKSYFRTSLQMATAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAMRNGEDVTAAALMRLIGHDRDIVTAVYSSRSLETHWHVHPIKGEEPDESGLQRVERASIGFCKIKVPVFKKIALANIDRAAMLVDPNKAPKLVPELFPMELRGRNTSQYRLQQIWAALSEVKNDEVLRARIERELTIRYDEPNSYISEDFGFCDLARAAGYDIWMDTLMVLGHQASVVVPIESGKLLEMLSEPWRKEELAIIKQQMLEAQAAKKK*
Ga0151516_1034430	F023838	N/A	VTPAHGTTIDLDRLIRCLEAREGARWASPGGALQFTKATWSEFSSDPYLRASQPDKARQIARKALFLTIQRMERDGIRPTVWLLALRWNCGYDGMKRRMGEPWSYAAHVHNLYYDNDFR*
Ga0151516_1034431	F020891	N/A	MTFAEHAFAACARKAKEVGRRLNKDEWLATMQAAYDSYPHGGLLVSDSPKPKKVLPKASNEDWLKELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFINWLNKAMTDRPIGLVAGQSSFNRPQAPKPDEPAGWREWVRENSTDPDNANKPWSALDASAQKYIISKLNEPPAVHPPRPSPRPVLDREEVSDEDVPMARQTDAGALLVGSLLQSYRKAF*
Ga0151516_103446	F084179	N/A	VAEGVVGKLCRNKQYNELRVVGEDGRELWTKVGNWLFTGGLVRGERVLVRKIWGSGDDTDAEYEVVRRIDVNEDVPQVPTVVDPIGVKSAPIEAMAAPASAVSKQETPVAILPQFQREEPDYPRKQESADDYIARIRAEAAMWANGQGR*