Scaffold Ga0151516_10241

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10241
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31955
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (45.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F051884	Metagenome	143	N
F077050	Metagenome	117	Y
F088307	Metagenome / Metatranscriptome	109	N
F093284	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1024110	F093284	AGGA	MSERAQNLMDQIWNIRYLNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDKNDLLQLAEELK*
Ga0151516_102412	F018714	GAGG	MTDFEYQKTLLIGAIIGVCFTLLAFYMLKPSSQNHTVTPEKNFAVVDRYEDRCDVVQWSDNQMATYKYFLDCSK*
Ga0151516_1024124	F077050	N/A	MADFKVSQNREASAHSVKLSSGNSFTISQEKTVVAEFLSDLADVAVSNLPASDNYVLTYDASLQKYTLVPADQVLQSAAEDAQLPQEFVDQLDVALDDKIDVDAGGF*
Ga0151516_102416	F088307	AGG	MTEIQELQENEKVLDKSAFKVSQILRIFVEGIDKAKFVYLYTLLYNQMGQGPDGKPCEEGDENMRHWLNTYNTHLEFCPADELVNKMPEIIGYLESFL*
Ga0151516_102418	F051884	GAG	MTESKDDAPWLDTTYDGFDEEQIKKVLKSQRQAQKLLDAAHRVADGEVPLGKLIRLGHKDPMSVRVRYEYGAILLALVEECAYKKDELYLVNVRDILDIIEVLNNGC*