Scaffold Ga0151516

Basic Information
Taxon OID	3300011116 Open in IMG/M
Scaffold ID	Ga0151516_10114 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011116 Open in IMG/M

Scaffold ID

Ga0151516_10114 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	42066
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (76.06%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42066

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (76.06%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1011430	F098923	GGA	MFFYEEIDRRHIDALADILEDSDVAPGKLMGKEAGPLAWIMNQMLYDKFHGHGWKLDLLTGRFIQTGENKCH*
Ga0151516_1011433	F057984	GGTGG	MRNNSVHDRVPGRLSILACKKGDKRKIKMGGLGQIKILAERKVEMVELDIEVDDKTRDIVCHAALHEITSDGDALFNYGSNQALKRFIQTKGKKCTKKSSNKKRSRR*
Ga0151516_1011434	F091592	GGA	MISAQFTRGDQDDRIKQLAGEVAIRAMQDIRLLQRRGVLDGLRVTKNRIGKLSDCNCYRDPKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKRGIGNVN*
Ga0151516_1011435	F102824	N/A	MTPVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKGKAQDAADLWNAYAMWCKDRSGKRKRK*
Ga0151516_1011437	F039993	N/A	MKLAIAWICYWIGDLISITIMRYGYGYSLYNKLMLLSSDLDDKGIIWK*
Ga0151516_101144	F001459	GGCGG	MRKLKAALAFIRDQEWVEEPKWLEEDEKAWTTFLGTPTGKKLSLILLNLTLRQNASAVMKKPDGLAEACGRANGYRACVATLESLASSKLNSAIAGYGDGEDEPVAN*
Ga0151516_1011440	F039994	AGGA	MNPPTISEMADASSEIVWRVMGKGSDKSSYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPCPDESGENALDHLERAVVRALFAWMQLKKGLPKI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151516_10114

Overview

Ecosystem & Geography

Associated Families

Sequences