Scaffold Ga0151516_10057

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10057
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 57194
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (77.46%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001229	Metagenome / Metatranscriptome	741	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003643	Metagenome / Metatranscriptome	475	N
F004666	Metagenome / Metatranscriptome	428	Y
F008305	Metagenome / Metatranscriptome	335	Y
F038669	Metagenome / Metatranscriptome	165	Y
F043387	Metagenome / Metatranscriptome	156	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1005717	F002071	AGGA	MTTTLEVGKAYTTTQSGITGIIKAIDNHPSGTARVLLDVDGKERWTSVSTKN*
Ga0151516_1005728	F070095	AGG	MELTIDLEYFALYISNLYPSGIAIEIPTWLLFGGISLAWSIRQWRK*
Ga0151516_1005729	F043387	GAGG	MMTKWDTIQLDVADAYRHLDELEALDKVNAEAEFDEDIVSLDELIENELTLDWEGAE*
Ga0151516_100573	F004666	N/A	MTTKREYLKSKGITVGRRGRFSGAANQAISEAVKNGVQFTKETPVKSK*
Ga0151516_1005735	F002489	AGG	MAEEQKSQSLEDNLPMVTYIMLHRIYDMLTLIAKKSVGADEVFKMVEYHNDGFLLGPAPSFTPQPEENDTEFSQDVLDLEK*
Ga0151516_1005740	F003643	AGGAGG	MSKQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLVKGGIAACLPVILKALNPNETAFGFTKK*
Ga0151516_100575	F038669	GGAGG	MNYEHLDYESLSKLDPRLQKLVDMGESGTDIMHGHLKNRMYECEKVLLGISEGDTKQYIQGYMDALTEIYAMTYNLSFAISDRSKARG*
Ga0151516_100576	F008305	AGGA	MLGYTYKDIQNFGNALTVAIDSATDPSVKQGLLTIWDFFEGLLAEGYIDENTFYG*
Ga0151516_1005765	F001229	N/A	MKLDVYKQIDTQNPDTGAIIKEWQFYKTLDCHAKGVISNSATTRSSDKQIFNNKYINDQIIQVRTEDRLTSREKVTNIRDMQGNYIWVELDFPTDTPTVFEVMGTTPITDPFGRVIGYNSSMKRSENQQIGF*
Ga0151516_1005767	F000258	GGAGG	MTANYKLDAMLELRKFLWNKLVAASIFDDTEYYSDNLGESLVPIIPVQQSAEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQILFTIYSTDVSEINEIRNFMTDEFRRMDDSAKDVNKFPTLSNKFKFHSIFVADISPTAPSEELQGFLSADVILEIKYSRITDLVGRFS*
Ga0151516_100578	F000450	AGGCGG	MGDRANFVFVDGAGDTICLYGHWAGHNMLGRLADAVIAARPRWNDESYATRIAISHLIGDQWNMETGWGLQVNSIGDNEHKIAVINWQQQTFSLHEQDDHRNLENKVLGMRNEAIFTMDLTAFCEKYAFEKLLT*