Scaffold Ga0151516_10045

Overview

Basic Information

• Taxon OID: 3300011116
• Scaffold ID: Ga0151516_10045
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 63039
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (90.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006622	Metagenome	368	Y
F017452	Metagenome	240	Y
F042223	Metagenome	158	Y
F052582	Metagenome	142	Y
F083882	Metagenome / Metatranscriptome	112	N
F085600	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151516_1004517	F042223	AGGAG	MAFTRSADGIAKQGKTKGKNLGDSGPTVGEMSGGKGKGGGKTNANMKAMGRNLAKIAAQKRG*
Ga0151516_1004526	F085600	AGGAG	MGMQTDTRGATCPVSTDTTAYNGRTRFKGLWYSATGATTIVIKDGATTLFTFTIGAAGVSSIWIPGEGVICSTSLVVSVGATCAAVAFYG*
Ga0151516_1004537	F083882	AGGAG	MQMMPNVDADIPLPASATEAMPPLSPKEEIEMRARTVKMISDLNGNPIEPTPEHKGQARELMEKVVANKTTPELANYPNETIAYLAGMVATYDHMIVRELADFKLYVVNKLVAETENPNSTVRLGAIKALGDVDGVDAFKKRTEVTHKQQSLEEVEKELLETLAKLEKRTIDVQAKVIRSEDNA*
Ga0151516_1004567	F052582	GGAG	VSKSKTPEPLYRQFTPEEDRGKTRVSKYYRVNQNMDALGTGLHPYNIECNLRIDFDLDGGIYKVEWSNKVLGERK*
Ga0151516_1004568	F017452	AGGAG	MIHTEEDDEFERIAHENAMKSGQPYHYDVFVSPSQRNTVLEEVAKEFDKMKSLGDTAASFSAFVRGMKK*
Ga0151516_100457	F006622	AGG	VNEYQKQFDMFLKVFVRLCIAWWVLGLLRFLPDELAGKIVDKLLGMIGL*