Scaffold Ga0151514_11028

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_11028
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10807
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F035668	Metagenome / Metatranscriptome	171	Y
F043286	Metagenome	156	Y
F059759	Metagenome / Metatranscriptome	133	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1102813	F102815	GAGG	MQNSTGEELFLKAIEAYKAWINCGKDFLNHSDLFDVWDDAVAAYGQSVFLERNRAIHQVLQGLEVIK*
Ga0151514_1102818	F059759	GAGG	MKAMTKQQIWDLLEIYRQMQVANTMAMHSDAFEELHLFIEENCLNVKEEKNA*
Ga0151514_1102820	F035668	GGA	MTCNKCVEGNCQCARVNSINIFGRDYKAGKSEGQQKEHSRTSEALIELERSGVITNAQMQAILDLILEKLTDALDID*
Ga0151514_1102827	F006985	N/A	MIREVCSCGAEFETDDREAIELIKSWRRTHKHSDKPQKPTERDSSTLSDTQVALGFKAIYDPLDDDDE*
Ga0151514_110288	F043286	GGA	LQDNQVECRRCGFKWAVNAGKRGRKDLLCISCRVKPAVTIQYGKLRCTPHQGKIDADLNPVNELGQPIFVGERICGHKDCVNESHILS*