Scaffold Ga0151514_10647

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10647
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14692
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048312	Metagenome	148	N
F056614	Metagenome	137	N
F097344	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1064710	F056614	N/A	MTLFNPVWKVEIQGVEYTTYILSNLTIASGRNNIYQQAQAGYCNIELINLNQAIVNININDSVSISLQDSTSTFVPIFGGTVVDFGVEIITAGNVGLNQVLKITALGALSRLPKALTNGVLAQDFDGDQIWEVLQDLLLNNWGEVPAALTWATYDPTETWANAQNVGLGEIDRPGNYELAARTSDRTDIYSLVSALATSGLGYIYEDASGLISYASSTHRSVYLATYGYTDLTANQALFNGLKIETRAGDVRNDITLKYNTNSNSEVSAEDIPSVNLYGRLAQVITTTVKHQADAQDQADFYLTLRAAPQANFTAITYQLTNPELDDGDRDSLINIFMGLPLRISDLPPNMAAGTFLGFVEGWTFKAAYNEISITLNLSPLSYSLQAMSWEQVNIAEAWNTISGILTWETALVVA*
Ga0151514_1064715	F048312	N/A	MPTTIQADVRAPLAAALAGVTASVYESVPEAVIPPAAIIVPGTPYLETTLISASIQLKINFTISAAVAYNNNAGALDNLEKLLIEILAAIPSGYIVGDVSRPSIVTLGSSNLLISDIDVSTYYKQEN*
Ga0151514_106475	F097344	GGAG	MFTILELAAVVIVASIGWFLVGWTIGFKQGVKDGFNRGRAAGMRAATDYVRSL*