Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10473 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10473 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17412
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (85.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17412

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (85.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F042880	Metagenome	157	Y
F051794	Metagenome	143	N
F052570	Metagenome / Metatranscriptome	142	N
F079999	Metagenome	115	N
F103175	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1047315	F103175	N/A	MCSDCKVAGEFNSQGQYDKAEEMHGYCKGDCACHHKTGPGWFVRKGQKATLMQTQSP*
Ga0151514_1047323	F051794	GGAGG	MKTISSERLEKFRQGKLEINEKHRKRKEKAERRAVWLRNYQRARGRALTKLAQQYPDQYKEILEQERLSDEANGKAWLDITGATDNSAGVLTDADGYNNTLRSEQTYGDEQNEGYLGGEK
Ga0151514_1047324	F005146	GGAGG	VKLTNFYEVADRKGDTAWGGASESEAIEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITKLVLTTIVSERGRG*
Ga0151514_1047326	F002827	AGGAGG	VNKEYYQAKADLCRDLAIKQMVEGNAKEAGANLIRMVNALNQINLINYKEEKGNE*
Ga0151514_1047328	F052570	AGGAGG	MRKMKYKLPKGVELVIDDYDAERKDRQDSAFYTWGDSHRVATLTYQGREYYVECVGEMRIHYKGDVLRYCDRLIKAGIKNDKDLAKIEESGGEWINNSWFEIYDESSGEYTGEVYHEVKDAIETVANWIIDKEAVNV*
Ga0151514_1047332	F042880	GAG	MANYTTIGELIEHLKGEDLSAPIIYQYYLAEHFEISEEVFAEVARDFDSLIPCSDSYEVISREINSKREEANV*
Ga0151514_1047334	F079999	AGG	VGYQGERGRESVKDIFELSFRWQDGAVQVIIYALVIYLGLVIISKITDKRKREGKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10473

Overview

Ecosystem & Geography

Associated Families

Sequences