Scaffold Ga0151514_10444

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10444
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18273
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (66.67%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F025739	Metagenome / Metatranscriptome	200	Y
F026543	Metagenome	197	N
F027777	Metagenome / Metatranscriptome	193	N
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y
F045612	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1044410	F035669	GGA	MRENQLNELQGVSILTKEFFNKLIRRIESTKPLAGSGVAIKQEENGIAISIGDGGFGFGNTAGYSAITLNVCSNGVPAKILVFGKSV*
Ga0151514_1044413	F012113	N/A	MNQILTFVQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKIVSFLSKFSRK*
Ga0151514_1044414	F025739	GAG	MKKLPTTAVSVIQKWTLGFIVGSFLCGCATTRSYDIGEVPNQDSITDYIMRWDKLDRSKANPEEYRQLFGQSLKTISRLVEENERLRKRLDQ*
Ga0151514_1044416	F011284	AGCAG	MTSQQGVEKTQKHFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQSKPPL*
Ga0151514_1044419	F005846	N/A	MTSFPLPARPIGSAVPANHDEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMADMILGAGIKSRFVDCEIMGQRTKAGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPDNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVVWEGFVMKALNDGKYPFITNPNYCSPAWQKQRIRW*
Ga0151514_104442	F045612	AGGA	MNYQYTYEDFVASIKWLCDEGYIEKFIDEDGNTCVRICEGAENCEI*
Ga0151514_1044420	F005702	GAGG	VIIFLVVFFGLLILQAVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELVLPSKNWVGRN*
Ga0151514_1044423	F027777	AGGAG	MSEELPTFWYEEPANKKLPNETTDEWVVRLFGSFPDTEYDQSKDFRSLNLPVRGSKEDRESLGDYDYNQQPIRRMK*
Ga0151514_1044425	F023833	AGGA	MTKSHSDQLQDIINDAMRKAATLERERCAELVQRLSDGTEDQVIKEILNEVVTAIRRLSDVH*
Ga0151514_1044428	F023585	AGGA	MSVKRLKLVDEFHAIVSRRLKELFKDFDHAKRENYKDIISHLDYSHRITKELLDRAKKYQKRDAEAKKK*
Ga0151514_104443	F012433	GAG	MSADQIGELRERLARIEERQTNIITILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALVSGAIFSTIWELIKVRVFPR*
Ga0151514_1044431	F010463	AGAAG	VNELVLAATIHRVKMCEDRIKEFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPKELVPTYGKYRARGNRSHSVVKKRWEIWKAQHESGLSLQEIAKAWGCHHTSVLNAKKRNFTARKATGRNTK*
Ga0151514_1044434	F024265	AGTAG	MNESYVTAEAKAQGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0151514_1044438	F007164	AGGA	MSEKQIGMELQKTVRQLEKAKENAIEQMGQAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRLERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSPSQWTPAQRTQFLEEARPIVEAYKEAGGEV*
Ga0151514_104445	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRIIKEDGSTQATFWFEAGAGAEAKAEMERPWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL*
Ga0151514_104449	F041645	GGTGG	MASVVIGSAIDSKVLQRQNFNKEPNGLETIIESYAIKTANRDTVVPEKNTLHSAFSSSSKKYSRMAVESVTTEEQDGGITSMLVTFVGLTTSTGLPPPIVRLIPTAGEGVYGPPLVIEAEYLTDSSEAQFMAGQLGQNNANAVAGYSPQVKMPSSINGTAMPSDPRVPFYSAPISGSGLIISYRGYCVLSKSCERRGLFLVARDTFHEVQTIAVASSGTLK*