Scaffold Ga0151514_10409

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10409
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18886
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (67.74%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F019319	Metagenome	230	N
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F037220	Metagenome / Metatranscriptome	168	N
F040082	Metagenome	162	N
F041650	Metagenome	159	N
F058107	Metagenome	135	Y
F077020	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1040913	F021759	AGAAGG	MDAGLATVLAAAVATFGGIVVALMQLKGFREENKADHAIVQKRLDTVIDMVGKQGAKLTSHLDWHLTKEPTKDLPKVKQVATRKKK*
Ga0151514_1040914	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVQSVGFLLATSDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKHIKILMDLETNSPDR*
Ga0151514_1040915	F005528	AGG	MMRILTAILATLTSLTMSLGIAQAVSAPAQPSVAVIALQPLWQADRLDPIQPIRYRHGDVSWLPNLAKQAGWPDQAIPQLTQIVLRESGGCPNRRGGDKVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSKNKWAAICRELNICSQTPLLDPLTNLKAGLVLYNLSGFEPWNPCNWQVCKASTTSMP*
Ga0151514_1040919	F025023	AGAAGG	MIDTFEGRMMDVGVDRTCVLQLQSDFDSLRPHQRAMVKKIATECNEYGHSISLDSLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAECAEQFAVICRAIRWDEQDIVWNTSTDSFGFPKQKASK*
Ga0151514_1040920	F037220	GAG	MSDEQDLLAGGGPKLPSLKFEKIGDVHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITLKTDKNGDANLWARGAMITAIREAAKQASVTELTGNRISVKYSSDGEKKAGFNAPKLFAAKVEKVATDDRW*
Ga0151514_1040921	F019319	GGAGG	MTKKDIQDAIAFLEKMFVGVGDQDRLFEVIAALKEELARRNKR*
Ga0151514_1040922	F040082	AGGAG	MTQDPYAMSQEIVELQTRVAELSVALERVTEQRDNAVDAAESLHQELEACRDRIKTLGGQLDRLRIHLQQGIEL*
Ga0151514_1040923	F058107	AGGA	VITIGMDSFIVCQLCDGEVRLDTKRITGCLCDPDAPTWVGIEPNGRVLTFSQSNYEIVTDLGPRHNYD*
Ga0151514_104094	F077020	N/A	MPKTLKWGQAYSVLLDVGAIADAFTLNTSTLNGTDVLDGSTDFVDATEYVLSVAIQRGRGSQIDQFSPGTCRILADDRASGRLFDPANTASTWYQGSFDLAPRRAVKVLAGTAELFVGAITDLDITYEMPNLSFASINAADGLYELSRTSMTAFNPSSELTSARVTTILNRAEVNYSTALRDISTGVATCGTVAYADNTNTLSALQAVAIAEDGRLFADRRNKITFDPRIDFTFSTAIASFGGTAVSAIPILAIGVAYGQETLFNRVQIDVDGGTAAQVAQDSASQTQYGVQTLAFSNVPLDTLAAGSALAQNLLDKYKDPKIRFDEISTSLNACGSALWPTVLTLDVGDVIAVTKTYETGLPLTRTESVFIESVNHDITPSDHRIRFGLGQAQLLTAFILNSSTLDDVNVGLV*
Ga0151514_104097	F041650	N/A	MREDIQLSLAEVQMPRTRYQLEHFVIGAHDTPEMQFVQVCRELEALHYTIKEVALQVRKTEYEIEDLREKGDRISQVEADIKELGLERTRLVAIGAVREYGTLVEIYDSIPHFTREQIDASQPDYWQARLGRQANLQIMSGGTNWAHLEALDQVGVLQSMIQAQQDRAKELQQ*