Scaffold Ga0151514_10364

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10364
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20043
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (91.49%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F018532	Metagenome / Metatranscriptome	234	N
F029418	Metagenome	188	Y
F100665	Metagenome	102	Y
F103144	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1036410	F012016	AGGGGG	MQETLKDELPRQPDGWWTREFNANNDLVFSAFTQFRPTEISWVRDLPNKKHYLIIAPFYVNEAQAEKITGVKSYRESTKRLMEAYNGL*
Ga0151514_1036419	F029418	GAG	MMTQHQVNEEKKRKFEEDIIEVAVAEYYAYADEHKRERKEKDAKMFYDAMRLGVIRGINFATNQYMQSLKNFEEGKKDGTTD*
Ga0151514_1036436	F103144	AGGAG	MIYDHYFDGRKPSKNQVIQAIKRGLKEGHVQFEISWGENMVTLEKGRAGPNIWHGHGWIKNISGSDLADQFNKEGA*
Ga0151514_1036443	F018532	AGGAG	MDQTLELLLSRIDDQRKTVLMNLGDGAAKDFASYQNMIGYIRGLSVAEGIIKDLAQRMETYDDE*
Ga0151514_103648	F100665	AGGAG	MATRKPYIKVVSIKDRKDGDCDLKLDVNQAGKELIMQAGVQKVLQDFIAENTCKLSFWQKLQICWGILK*
Ga0151514_103649	F006587	GGA	MDSNKYEGTGYTVVGLIVGALLMWAVMEATHIQKKYKMNLKCVQGELYEEVRPNMFVKSHLECFEQRSF*