NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10321

Scaffold Ga0151514_10321


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10321 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)21880
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (67.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009887Metagenome311Y
F011143Metagenome / Metatranscriptome294Y
F020143Metagenome225N
F024787Metagenome204N
F026555Metagenome197N
F033425Metagenome / Metatranscriptome177Y
F081333Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_103211F033425GAGGMAIVNSQVTVTGTSQSIVGVDNVTRDVRLHAKQAILIGNSGVTTANGFLLDNGDKLRLTLMDGEDLWAVAVSSSGTLHVLVSKVD*
Ga0151514_1032127F020143AGGCGGMQPKYAGLPGRTRSLAAVPSIYVENLDELLATMKKVEPDLHKEFRRELTKAVKPVAKLAQSFVPHSPFPGWRDVEPSYPPAWGWANDQAHRGRTFGESKRSRWKWSQTEVVRGIRVSAAKTKIQRVKGTTFSVTALAVINKSVPGIIYELAGFGTSKSRSKTRRISRNTNASESFIGKLQGTASSSGYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGEKFRG*
Ga0151514_1032129F011143AGGMHKIEIVKKDGKKVTYDLTPSAKVAFEAEFKTGWRKRLSELQMESDLWWFAWRLEKDAGKTDLTFGDDYINQYSDIDLVYDSKNG*
Ga0151514_1032137F081333AGGAGMKYLPSVLQVAGSFLIVAGVATFYPVVAVILSGVFLVLFGIALENRGK*
Ga0151514_103214F026555GAGMSNFDYHKAMREGHGYNLYVADLLQHFGVPKVDVPAFSIATTHDQIRDKTLNEKDVIVDDLVLEIKSSSRSFTNADDFPFNPVMIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTSTKYDWTIRTYFDADREIEERFYMVKKRHCRPFIEMVDVLLGRANERANQMQ*
Ga0151514_103215F009887GGAMGNMEMIGADGVRATFTDSGVELDIVPLNECCEWCNDPRMLNINGVRKCAGCGCVNHIEYKKS*
Ga0151514_103217F024787AGGAMNSEIYGWLITIILFTLVALLIGVTWMVAVENGYDKGFKSGYKRGLADTKQSSVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDRENK*

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