Scaffold Ga0151514_10321

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10321
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21880
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (67.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F011143	Metagenome / Metatranscriptome	294	Y
F020143	Metagenome	225	N
F024787	Metagenome	204	N
F026555	Metagenome	197	N
F033425	Metagenome / Metatranscriptome	177	Y
F081333	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_103211	F033425	GAGG	MAIVNSQVTVTGTSQSIVGVDNVTRDVRLHAKQAILIGNSGVTTANGFLLDNGDKLRLTLMDGEDLWAVAVSSSGTLHVLVSKVD*
Ga0151514_1032127	F020143	AGGCGG	MQPKYAGLPGRTRSLAAVPSIYVENLDELLATMKKVEPDLHKEFRRELTKAVKPVAKLAQSFVPHSPFPGWRDVEPSYPPAWGWANDQAHRGRTFGESKRSRWKWSQTEVVRGIRVSAAKTKIQRVKGTTFSVTALAVINKSVPGIIYELAGFGTSKSRSKTRRISRNTNASESFIGKLQGTASSSGYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGEKFRG*
Ga0151514_1032129	F011143	AGG	MHKIEIVKKDGKKVTYDLTPSAKVAFEAEFKTGWRKRLSELQMESDLWWFAWRLEKDAGKTDLTFGDDYINQYSDIDLVYDSKNG*
Ga0151514_1032137	F081333	AGGAG	MKYLPSVLQVAGSFLIVAGVATFYPVVAVILSGVFLVLFGIALENRGK*
Ga0151514_103214	F026555	GAG	MSNFDYHKAMREGHGYNLYVADLLQHFGVPKVDVPAFSIATTHDQIRDKTLNEKDVIVDDLVLEIKSSSRSFTNADDFPFNPVMIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTSTKYDWTIRTYFDADREIEERFYMVKKRHCRPFIEMVDVLLGRANERANQMQ*
Ga0151514_103215	F009887	GGA	MGNMEMIGADGVRATFTDSGVELDIVPLNECCEWCNDPRMLNINGVRKCAGCGCVNHIEYKKS*
Ga0151514_103217	F024787	AGGA	MNSEIYGWLITIILFTLVALLIGVTWMVAVENGYDKGFKSGYKRGLADTKQSSVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDRENK*