Scaffold Ga0151514_10230

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10230
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27850
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F012428	Metagenome	280	Y
F028085	Metagenome	192	Y
F053810	Metagenome / Metatranscriptome	140	Y
F057982	Metagenome	135	N
F075693	Metagenome	118	Y
F088552	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1023010	F075693	AGGAG	MDNEAIQKAWKLMSMHNSELLLENEQLKKQLMRRSLWYSIKRAIKIWRGKE*
Ga0151514_1023023	F088552	N/A	MEKNMSALQPRTLNNQELIKYFAMYMEDNEFGAPVEWQIELLRRFTAVAPDKDFPLRDPNQLDLFS*
Ga0151514_1023028	F053810	N/A	MNLTVRPVDVTHIQQVWPMVEGYIQESMNKGGDFPEWAKGYNLSHVQAFVTSGQWLLLVAVDEERVIHGAMTISFLNYPLHRVAFVTSTGGKFIANPELLEQLKDLVKVHGATKIQAFCRESMVRLLSRAGFEPRNTLVEVLV*
Ga0151514_102303	F028085	GGAGG	MVEALASIIFMAAMLGLGAIFFVIVCAMIGWMIYTTQNGGDDE*
Ga0151514_1023031	F012428	N/A	MLQNRSAPNIPQAPKEYDQSYMNSFSNVIRLFFNTINTVQQLNLAALNLDIRTLPTDEDYDSLRVGDVYRDTEGGTLQTGTNVLRIKVPVDLTGVSGLGAVGSVGPVGGTITRNLTGVSGSGALGTVTP*
Ga0151514_102304	F057982	GGAGG	MNEFKYRITYNNGNFADWDSMQKELAWAYKWGIFLYAIRLNIGAWRGGHKSFKYWLYVLRREPKITRERT*
Ga0151514_102306	F002420	AGGAG	MTFRETTVKYIKDILRPKTIYEVICAELQEAHLRKLEAETAAEYADAAIKYNSRRIERLKQRLFEHAEDT*
Ga0151514_102309	F008303	AGGGGG	MIDRLILSAVLGTVGFNGLYPDPPPPLTLKQKAKERSISNMCDRKPKSKAAKDLCKRWKEQRNG*