Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10203 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10203 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	29231
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (86.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29231

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (86.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F005558	Metagenome	396	Y
F012770	Metagenome / Metatranscriptome	277	Y
F030732	Metagenome	184	Y
F033006	Metagenome / Metatranscriptome	178	Y
F046323	Metagenome	151	Y
F079979	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1020314	F033006	AGG	MKWVENNFFDHLDKFGNSLGYDNFGIAVCLSMVPWKSPQDRDVFIMTLTGEDVKGGEPSTFNPGSAVM*
Ga0151514_1020324	F005558	GGA	MNEEEQLSWSELAELTHETQVAKFNWCMCEDNEGQENPYTDCPKTGDN*
Ga0151514_1020328	F046323	AGGAG	MTQHFQVVYETKGVKVVNVWLPEGTELPAQWATMTYTEQDEWLYEHQVEAKTLWQDEHQGQAVNVLPVTQLKAVI*
Ga0151514_102033	F001599	AGGTGG	MNDKLAIAWCDNGMVDGKFMQGVTDVMLHSGVEVATTLRSQGNQKERKRDKVINYWYDGNKSDWLLWVDSDVVISPDTFKLLWDNKDIKERPIVTGVYFTTDQPEEPLMEPMPTLFNFVANGDEIGIKRVHPLPKDKLLQVGAAGMGFVLMHRSVVDRIREVLPKAPLFSDVGHGKNFMGEDIYFFALCDKADIPVWAHTAATVPHMKRFSFDVNYYDAFVGNKRK*
Ga0151514_1020331	F030732	N/A	MFVVTVMWDEETREVGWYDLKQECKECKAISTAPTPMDWRD*
Ga0151514_1020337	F012770	AGG	VSQEPEDPHNYCHDCHLQFDDSFQLVDHYFEEGEEFDPYYILPNGYKLLLGSLLRFMFNHADDPNQIRLITQSTYVTLFASENGYDLVDELVEDMVVKSALVDFDQNLARLLETGTNDDEGGA*
Ga0151514_1020341	F079979	GAG	MMIREEEDDMTQEMRAFVLLEIKRETAALVEKIQAAKVPVTDEWTDGLNAGLDWAVRILNKDKSAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10203

Overview

Ecosystem & Geography

Associated Families

Sequences