Scaffold Ga0151514_10184

Overview

Basic Information

• Taxon OID: 3300011115
• Scaffold ID: Ga0151514_10184
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30769
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003862	Metagenome / Metatranscriptome	464	Y
F004721	Metagenome / Metatranscriptome	426	Y
F005587	Metagenome / Metatranscriptome	395	Y
F032951	Metagenome / Metatranscriptome	178	N
F038155	Metagenome	166	Y
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1018410	F038155	GAG	MNTNRPNGKAYKKRPKVQKQTGKTIGGYSPTKLAIRAQKRAKA*
Ga0151514_101842	F103146	N/A	MSEPRYLEGDEAALNTEPESDDDDSGLPDRMWEDDE*
Ga0151514_1018424	F003862	AGGAG	VATYLFRTPTLEQGPIGGHRLHQHFKQRTKSYTVINESGTYSLTQYPLDSDLADYTAYYIGGGEHTGISEAIRTAMIAASIGITSANFTVE*
Ga0151514_1018427	F032951	AGAAG	MSSGQFVRSDRFNKTIMRDGLILTLRKDGTVKVQRDPKTGDIIKGQK*
Ga0151514_1018431	F004721	AGGAG	MAGTAGSSLTAELNRLASTTGKAAQGAANTYAGTSGLGLIAALNIKASGVRQPSAYKGLNAICNELAGTTGKSASDALRTI*
Ga0151514_1018438	F005587	AGG	MSYLAKAIFELKPNAEFSFTDNDYSTIKWDSLEGKAPTQAEINVAIEQIKAEEITAEAAKVTAKTALLTQLGITAEQAKLLLS*