NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_11106

Scaffold Ga0151515_11106


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_11106 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10047
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F059760Metagenome / Metatranscriptome133N
F068428Metagenome124Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1110610F102815AGGMRDPEMLFLEAVNAYKAWINCGKDFLNHADLFDVWDDAVTAYGQSVFLERNRAVHQILQGLELIK*
Ga0151515_1110615F059760AGGAGMGVPETHHIISRAIQESRDNAIEAVLSIIDSYKRLQMPLDPKDAYDLGARDAIDTLVIHLTKFAEGLKAGRK*
Ga0151515_1110616F035668AGCAGGMSCNNCQDNCQCVRVNTINIFSKDYKAGKSEGQREEHTRTSDALIELERKEIITNAQLQAILDLILEKLTDQVDIL*
Ga0151515_1110620F068428GAGMFEDLKLPKRQTNCRIRTILSELSDKDKAIFEQAVMSPEWPYKTLSNELYKRGTKCSDAAIKHHREKRCSCLKD*
Ga0151515_1110622F006985AGGMIRETCSCGAEFETDDREAIELVKAWRRTHKHSDKPLKPAERDSSTLSNTDIALGFQAIYDQYNDPNDEEEE*
Ga0151515_111067F011142GAGMAQVKVTGKVNKVFGASSQGLSLVESYKSATGEDYTRTWTVWFAVSHNIQVDSDVTVTGQLSAKIEDFEDKTGKPGRKVKLDVNNAVVVEAPKVSAATDLPF*
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