Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10489 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10489 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17274
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (28.81%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17274

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (28.81%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F014004	Metagenome / Metatranscriptome	266	Y
F024768	Metagenome / Metatranscriptome	204	Y
F025022	Metagenome / Metatranscriptome	203	Y
F085684	Metagenome / Metatranscriptome	111	Y
F091930	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_104892	F025022	N/A	MELIVTAVKRDDGLYHFNHSHNDTVEELLMNGTEEVLDEHFYFGTGRHAVENDQMEIILNTEEPADYDTLLVKEVSDDDGTTYTDTTLCSPVWLCNWNQGYFGFVPEELYVKVRPINKGLEGFVNRTGMRKMLNK*
Ga0151515_1048925	F013631	N/A	MIVSEVFHYTTSRWDWQDCNMNQMWIEEIEESPDCYKYVAVAYNPRKDARMVMSEPRCYADTLNWIRSWCRSFCILPEFSVAV*
Ga0151515_1048926	F014004	N/A	MMTTLTLEVTEVLFDFDDDDFTPEEQQLVVDSTVGEVFKVEVFDPYDDDEIADAIVEKVTDFAEWTIVSLNYRWA*
Ga0151515_1048940	F085684	AGCAGG	MIYAYGEIERIYKELKEVIERENKLHEMDMTIMSQHLNLLEDEVIPLLEEIVYFDPSP*
Ga0151515_1048943	F091930	GAGG	MFVDEFVRHDDYEFFASYLGVDYEDYVELIGEFELSEEEIEIEYALSI*
Ga0151515_1048956	F024768	N/A	MDYKTKITNGHKHIVHHFFKTHEVQVGSRWIDSSGGIVTVEGFNTYGSTNPWIEVVYSWDENGAKRTNDKDVFSFQCRYCLIVEDT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10489

Overview

Ecosystem & Geography

Associated Families

Sequences