Scaffold Ga0151515_10173

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10173
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30117
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (51.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004740	Metagenome	425	Y
F005113	Metagenome / Metatranscriptome	411	Y
F014606	Metagenome	261	Y
F019100	Metagenome / Metatranscriptome	231	Y
F036674	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1017318	F036674	GGAG	MAAVRDFDSTQLQADYDAILAQAGVTFTYFGTTVTGIWSSSRNMFDEFSEQRREEEKFTVFFTTNQVVTTPKQSQTCARAGITYFLEQVRFDTEGTGCEFDICRDI*
Ga0151515_101732	F019100	GGA	MTEPEQSPSEILARRNVANIAAKLKAGKTLTTSERKALNDFQTGQLDGWVKDTTTLAKELNLSRQAIYDARNRFPDAPKKHEDGRRENLAEWQKFCGDNLIGKDPTSKNLAELKAELIKRDITLRDMKIAREAGDAIDRSVVEEMLVTLGQKLDLLLRLKLEVELGPRVMGKNAAEANVEGGVILQEIREVINANIATFEGEALDRSRDGEA*
Ga0151515_1017320	F014606	N/A	MSTRTDIRNAIGTKLTTAAVCVTANLIRGRNNTISSTSFPACAVYAINEQIEVRSLAPNNRTQYRQLQVQVDYFTGEVAGSTTIIDDLFDTGSAAVEAAVLADPTLNGTCRDLHLSNVDYVIEPDEERRWGTARHTFNCIYLTTD*
Ga0151515_101734	F004740	N/A	MANDNPFQDLDAATLQTLKTKTLDAIQAVLLNSSYSLNGKSVTRADLNSLNRMLGQITSAIDVVAGNTTDVTFVSFNGN*
Ga0151515_101738	F005113	AGAAG	MTKDEHKTVVVQQLQQQSINVLIDSLAAALAEIESLKAKLEPTKE*